Python Module Index

_ | a | b | c | d | i | r | s


	_
	`tvb.__init__`

	a
	`tvb.adapters`
	`tvb.adapters.analyzers`
	`tvb.adapters.analyzers.bct_adapters`
	`tvb.adapters.analyzers.bct_centrality_adapters`
	`tvb.adapters.analyzers.bct_clustering_adapters`
	`tvb.adapters.analyzers.bct_degree_adapters`
	`tvb.adapters.analyzers.cross_correlation_adapter`
	`tvb.adapters.analyzers.fcd_adapter`
	`tvb.adapters.analyzers.fmri_balloon_adapter`
	`tvb.adapters.analyzers.fourier_adapter`
	`tvb.adapters.analyzers.ica_adapter`
	`tvb.adapters.analyzers.metrics_group_timeseries`
	`tvb.adapters.analyzers.node_coherence_adapter`
	`tvb.adapters.analyzers.node_complex_coherence_adapter`
	`tvb.adapters.analyzers.node_covariance_adapter`
	`tvb.adapters.analyzers.pca_adapter`
	`tvb.adapters.analyzers.wavelet_adapter`
	`tvb.adapters.creators`
	`tvb.adapters.creators.allen_creator`
	`tvb.adapters.creators.connectivity_creator`
	`tvb.adapters.creators.local_connectivity_creator`
	`tvb.adapters.creators.siibra_base`
	`tvb.adapters.creators.siibra_creator`
	`tvb.adapters.creators.stimulus_creator`
	`tvb.adapters.datatypes.db`
	`tvb.adapters.datatypes.db.annotation`
	`tvb.adapters.datatypes.db.connectivity`
	`tvb.adapters.datatypes.db.fcd`
	`tvb.adapters.datatypes.db.graph`
	`tvb.adapters.datatypes.db.local_connectivity`
	`tvb.adapters.datatypes.db.mapped_value`
	`tvb.adapters.datatypes.db.mode_decompositions`
	`tvb.adapters.datatypes.db.patterns`
	`tvb.adapters.datatypes.db.projections`
	`tvb.adapters.datatypes.db.region_mapping`
	`tvb.adapters.datatypes.db.sensors`
	`tvb.adapters.datatypes.db.simulation_history`
	`tvb.adapters.datatypes.db.spectral`
	`tvb.adapters.datatypes.db.structural`
	`tvb.adapters.datatypes.db.surface`
	`tvb.adapters.datatypes.db.temporal_correlations`
	`tvb.adapters.datatypes.db.time_series`
	`tvb.adapters.datatypes.db.tracts`
	`tvb.adapters.datatypes.db.volume`
	`tvb.adapters.datatypes.h5.annotation_h5`
	`tvb.adapters.datatypes.h5.connectivity_h5`
	`tvb.adapters.datatypes.h5.fcd_h5`
	`tvb.adapters.datatypes.h5.graph_h5`
	`tvb.adapters.datatypes.h5.local_connectivity_h5`
	`tvb.adapters.datatypes.h5.mapped_value_h5`
	`tvb.adapters.datatypes.h5.mode_decompositions_h5`
	`tvb.adapters.datatypes.h5.patterns_h5`
	`tvb.adapters.datatypes.h5.projections_h5`
	`tvb.adapters.datatypes.h5.region_mapping_h5`
	`tvb.adapters.datatypes.h5.sensors_h5`
	`tvb.adapters.datatypes.h5.spectral_h5`
	`tvb.adapters.datatypes.h5.structural_h5`
	`tvb.adapters.datatypes.h5.surface_h5`
	`tvb.adapters.datatypes.h5.temporal_correlations_h5`
	`tvb.adapters.datatypes.h5.time_series_h5`
	`tvb.adapters.datatypes.h5.tracts_h5`
	`tvb.adapters.datatypes.h5.volumes_h5`
	`tvb.adapters.exporters`
	`tvb.adapters.exporters.abcexporter`
	`tvb.adapters.exporters.exceptions`
	`tvb.adapters.exporters.export_manager`
	`tvb.adapters.exporters.tvb_export`
	`tvb.adapters.exporters.tvb_linked_export`
	`tvb.adapters.forms.coupling_forms`
	`tvb.adapters.forms.equation_forms`
	`tvb.adapters.forms.equation_plot_forms`
	`tvb.adapters.forms.form_with_ranges`
	`tvb.adapters.forms.integrator_forms`
	`tvb.adapters.forms.model_forms`
	`tvb.adapters.forms.monitor_forms`
	`tvb.adapters.forms.noise_forms`
	`tvb.adapters.forms.simulator_fragments`
	`tvb.adapters.forms.surface_model_parameters_form`
	`tvb.adapters.forms.transfer_vector_form`
	`tvb.adapters.simulator`
	`tvb.adapters.simulator.hpc_simulator_adapter`
	`tvb.adapters.simulator.range_parameters`
	`tvb.adapters.simulator.simulator_adapter`
	`tvb.adapters.uploaders`
	`tvb.adapters.uploaders.bids_importer`
	`tvb.adapters.uploaders.brco.parser`
	`tvb.adapters.uploaders.brco_importer`
	`tvb.adapters.uploaders.connectivity_measure_importer`
	`tvb.adapters.uploaders.csv_connectivity_importer`
	`tvb.adapters.uploaders.gifti.parser`
	`tvb.adapters.uploaders.gifti_surface_importer`
	`tvb.adapters.uploaders.gifti_timeseries_importer`
	`tvb.adapters.uploaders.mat.parser`
	`tvb.adapters.uploaders.mat_timeseries_eeg_importer`
	`tvb.adapters.uploaders.mat_timeseries_importer`
	`tvb.adapters.uploaders.networkx_connectivity.parser`
	`tvb.adapters.uploaders.networkx_importer`
	`tvb.adapters.uploaders.nifti.parser`
	`tvb.adapters.uploaders.nifti_importer`
	`tvb.adapters.uploaders.obj.parser`
	`tvb.adapters.uploaders.obj.surface`
	`tvb.adapters.uploaders.obj_importer`
	`tvb.adapters.uploaders.projection_matrix_importer`
	`tvb.adapters.uploaders.region_mapping_importer`
	`tvb.adapters.uploaders.sensors_importer`
	`tvb.adapters.uploaders.tract_importer`
	`tvb.adapters.uploaders.tumor_dataset_importer`
	`tvb.adapters.uploaders.tvb_importer`
	`tvb.adapters.uploaders.zip_connectivity_importer`
	`tvb.adapters.uploaders.zip_surface.parser`
	`tvb.adapters.uploaders.zip_surface_importer`
	`tvb.adapters.visualizers`
	`tvb.adapters.visualizers.annotations_viewer`
	`tvb.adapters.visualizers.brain`
	`tvb.adapters.visualizers.complex_imaginary_coherence`
	`tvb.adapters.visualizers.connectivity`
	`tvb.adapters.visualizers.connectivity_edge_bundle`
	`tvb.adapters.visualizers.cross_coherence`
	`tvb.adapters.visualizers.cross_correlation`
	`tvb.adapters.visualizers.eeg_monitor`
	`tvb.adapters.visualizers.fourier_spectrum`
	`tvb.adapters.visualizers.histogram`
	`tvb.adapters.visualizers.ica`
	`tvb.adapters.visualizers.local_connectivity_view`
	`tvb.adapters.visualizers.matrix_viewer`
	`tvb.adapters.visualizers.pca`
	`tvb.adapters.visualizers.pearson_cross_correlation`
	`tvb.adapters.visualizers.pearson_edge_bundle`
	`tvb.adapters.visualizers.phase_plane_interactive`
	`tvb.adapters.visualizers.pse`
	`tvb.adapters.visualizers.pse_discrete`
	`tvb.adapters.visualizers.pse_isocline`
	`tvb.adapters.visualizers.region_volume_mapping`
	`tvb.adapters.visualizers.sensors`
	`tvb.adapters.visualizers.surface_view`
	`tvb.adapters.visualizers.time_series`
	`tvb.adapters.visualizers.time_series_volume`
	`tvb.adapters.visualizers.topographic`
	`tvb.adapters.visualizers.tract`
	`tvb.adapters.visualizers.wavelet_spectrogram`
	`tvb.analyzers`
	`tvb.analyzers.fft`
	`tvb.analyzers.fmri_balloon`
	`tvb.analyzers.graph`
	`tvb.analyzers.ica`
	`tvb.analyzers.ica_algorithm`
	`tvb.analyzers.info`
	`tvb.analyzers.metric_kuramoto_index`
	`tvb.analyzers.metric_proxy_metastability`
	`tvb.analyzers.metric_variance_global`
	`tvb.analyzers.metric_variance_of_node_variance`
	`tvb.analyzers.node_coherence`
	`tvb.analyzers.node_complex_coherence`
	`tvb.analyzers.pca`
	`tvb.analyzers.wavelet`

	b
	`tvb.basic`
	`tvb.basic.config.environment`
	`tvb.basic.config.profile_settings`
	`tvb.basic.config.settings`
	`tvb.basic.config.stored`
	`tvb.basic.config.utils`
	`tvb.basic.exceptions`
	`tvb.basic.logger.builder`
	`tvb.basic.logger.simple_handler`
	`tvb.basic.neotraits`
	`tvb.basic.neotraits._attr`
	`tvb.basic.neotraits._core`
	`tvb.basic.neotraits._declarative_base`
	`tvb.basic.neotraits.api`
	`tvb.basic.neotraits.ex`
	`tvb.basic.neotraits.info`
	`tvb.basic.profile`
	`tvb.basic.readers`

	c
	`tvb.config`
	`tvb.config.algorithm_categories`
	`tvb.config.init.datatypes_registry`
	`tvb.config.init.initializer`
	`tvb.config.init.introspector_registry`
	`tvb.config.init.model_manager`
	`tvb.config.logger.cluster_handler`
	`tvb.config.logger.elasticsearch_handler`
	`tvb.config.profile_settings`
	`tvb.core`
	`tvb.core.adapters.abcadapter`
	`tvb.core.adapters.abcdisplayer`
	`tvb.core.adapters.abcremover`
	`tvb.core.adapters.abcuploader`
	`tvb.core.adapters.arguments_serialisation`
	`tvb.core.adapters.constants`
	`tvb.core.adapters.exceptions`
	`tvb.core.adapters.inputs_processor`
	`tvb.core.code_versions`
	`tvb.core.code_versions.base_classes`
	`tvb.core.code_versions.code_update_manager`
	`tvb.core.code_versions.code_update_scripts`
	`tvb.core.code_versions.code_update_scripts.4455_update_code`
	`tvb.core.code_versions.code_update_scripts.4750_update_code`
	`tvb.core.code_versions.code_update_scripts.5454_update_code`
	`tvb.core.code_versions.code_update_scripts.6093_update_code`
	`tvb.core.code_versions.code_update_scripts.6600_update_code`
	`tvb.core.code_versions.code_update_scripts.6728_update_code`
	`tvb.core.code_versions.code_update_scripts.7350_update_code`
	`tvb.core.code_versions.code_update_scripts.7450_update_code`
	`tvb.core.code_versions.code_update_scripts.9444_update_code`
	`tvb.core.decorators`
	`tvb.core.entities.exportable`
	`tvb.core.entities.file.file_update_scripts`
	`tvb.core.entities.file.file_update_scripts.002_update_files`
	`tvb.core.entities.file.file_update_scripts.003_update_files`
	`tvb.core.entities.file.file_update_scripts.004_update_files`
	`tvb.core.entities.file.file_update_scripts.005_update_files`
	`tvb.core.entities.file.files_update_manager`
	`tvb.core.entities.file.simulator.burst_configuration_h5`
	`tvb.core.entities.file.simulator.datatype_measure_h5`
	`tvb.core.entities.file.simulator.simulation_history_h5`
	`tvb.core.entities.file.simulator.view_model`
	`tvb.core.entities.filters.chain`
	`tvb.core.entities.filters.exceptions`
	`tvb.core.entities.filters.factory`
	`tvb.core.entities.generic_attributes`
	`tvb.core.entities.load`
	`tvb.core.entities.model`
	`tvb.core.entities.model.model_burst`
	`tvb.core.entities.model.model_datatype`
	`tvb.core.entities.model.model_operation`
	`tvb.core.entities.model.model_project`
	`tvb.core.entities.storage`
	`tvb.core.entities.storage.burst_dao`
	`tvb.core.entities.storage.datatype_dao`
	`tvb.core.entities.storage.exceptions`
	`tvb.core.entities.storage.operation_dao`
	`tvb.core.entities.storage.project_dao`
	`tvb.core.entities.storage.root_dao`
	`tvb.core.entities.storage.session_maker`
	`tvb.core.entities.storage.workflow_dao`
	`tvb.core.entities.transient`
	`tvb.core.entities.transient.context_overlay`
	`tvb.core.entities.transient.range_parameter`
	`tvb.core.entities.transient.structure_entities`
	`tvb.core.neocom._h5loader`
	`tvb.core.neocom._registry`
	`tvb.core.neocom.h5`
	`tvb.core.neotraits._h5accessors`
	`tvb.core.neotraits._h5core`
	`tvb.core.neotraits.db`
	`tvb.core.neotraits.forms`
	`tvb.core.neotraits.h5`
	`tvb.core.neotraits.spatial_model`
	`tvb.core.neotraits.uploader_view_model`
	`tvb.core.neotraits.view_model`
	`tvb.core.operation_async_launcher`
	`tvb.core.operation_hpc_launcher`
	`tvb.core.project_versions`
	`tvb.core.project_versions.project_update_manager`
	`tvb.core.project_versions.project_update_scripts`
	`tvb.core.project_versions.project_update_scripts.1_update_project`
	`tvb.core.project_versions.project_update_scripts.2_update_project`
	`tvb.core.project_versions.project_update_scripts.3_update_project`
	`tvb.core.removers_factory`
	`tvb.core.services`
	`tvb.core.services.algorithm_service`
	`tvb.core.services.authorization`
	`tvb.core.services.backend_client_factory`
	`tvb.core.services.backend_clients.backend_client`
	`tvb.core.services.backend_clients.cluster_scheduler_client`
	`tvb.core.services.backend_clients.hpc_scheduler_client`
	`tvb.core.services.backend_clients.standalone_client`
	`tvb.core.services.burst_config_serialization`
	`tvb.core.services.burst_service`
	`tvb.core.services.email_sender`
	`tvb.core.services.exceptions`
	`tvb.core.services.figure_service`
	`tvb.core.services.hpc_operation_service`
	`tvb.core.services.import_service`
	`tvb.core.services.operation_service`
	`tvb.core.services.project_service`
	`tvb.core.services.settings_service`
	`tvb.core.services.simulator_service`
	`tvb.core.services.texture_to_json`
	`tvb.core.services.user_service`
	`tvb.core.utils`

	d
	`tvb.datatypes`
	`tvb.datatypes.connectivity`
	`tvb.datatypes.cortex`
	`tvb.datatypes.equations`
	`tvb.datatypes.fcd`
	`tvb.datatypes.graph`
	`tvb.datatypes.local_connectivity`
	`tvb.datatypes.mode_decompositions`
	`tvb.datatypes.patterns`
	`tvb.datatypes.projections`
	`tvb.datatypes.region_mapping`
	`tvb.datatypes.sensors`
	`tvb.datatypes.spectral`
	`tvb.datatypes.structural`
	`tvb.datatypes.surfaces`
	`tvb.datatypes.temporal_correlations`
	`tvb.datatypes.time_series`
	`tvb.datatypes.tracts`
	`tvb.datatypes.volumes`

	i
	`tvb.interfaces`
	`tvb.interfaces.command.demos.datatypes.modify_h5_metadata`
	`tvb.interfaces.command.demos.datatypes.read_from_h5`
	`tvb.interfaces.command.demos.datatypes.search_and_export`
	`tvb.interfaces.command.demos.datatypes.store_into_h5`
	`tvb.interfaces.command.demos.importers.brain_tumor_connectivity_importer`
	`tvb.interfaces.command.demos.importers.h5_import`
	`tvb.interfaces.command.demos.importers.new_importer`
	`tvb.interfaces.command.demos.importers.new_importer_launcher`
	`tvb.interfaces.command.demos.operations.run_analyzer`
	`tvb.interfaces.command.demos.operations.run_simulation`
	`tvb.interfaces.command.demos.project.project_export`
	`tvb.interfaces.command.demos.project.project_import`
	`tvb.interfaces.command.lab`
	`tvb.interfaces.rest.bids_monitor.bids_data_builder`
	`tvb.interfaces.rest.bids_monitor.bids_dir_monitor`
	`tvb.interfaces.rest.bids_monitor.launch_bids_monitor`
	`tvb.interfaces.rest.bids_monitor.tests.bids_monitor_test`
	`tvb.interfaces.rest.client.client_decorators`
	`tvb.interfaces.rest.client.main_api`
	`tvb.interfaces.rest.client.tests.rest_test`
	`tvb.interfaces.rest.client.tvb_client`
	`tvb.interfaces.rest.commons.decoders`
	`tvb.interfaces.rest.commons.dtos`
	`tvb.interfaces.rest.commons.exceptions`
	`tvb.interfaces.rest.commons.files_helper`
	`tvb.interfaces.rest.commons.status_codes`
	`tvb.interfaces.rest.commons.strings`
	`tvb.interfaces.rest.server.access_permissions.permissions`
	`tvb.interfaces.rest.server.facades.datatype_facade`
	`tvb.interfaces.rest.server.facades.operation_facade`
	`tvb.interfaces.rest.server.facades.project_facade`
	`tvb.interfaces.rest.server.facades.simulation_facade`
	`tvb.interfaces.rest.server.facades.user_facade`
	`tvb.interfaces.rest.server.request_helper`
	`tvb.interfaces.rest.server.resources.rest_resource`
	`tvb.interfaces.rest.server.rest_api`
	`tvb.interfaces.web.controllers.autologging`
	`tvb.interfaces.web.controllers.base_controller`
	`tvb.interfaces.web.controllers.burst.base_controller`
	`tvb.interfaces.web.controllers.burst.dynamic_model_controller`
	`tvb.interfaces.web.controllers.burst.exploration_controller`
	`tvb.interfaces.web.controllers.burst.matjax`
	`tvb.interfaces.web.controllers.burst.noise_configuration_controller`
	`tvb.interfaces.web.controllers.burst.region_model_parameters_controller`
	`tvb.interfaces.web.controllers.burst.transfer_vector_controller`
	`tvb.interfaces.web.controllers.common`
	`tvb.interfaces.web.controllers.decorators`
	`tvb.interfaces.web.controllers.flow_controller`
	`tvb.interfaces.web.controllers.help.help_config`
	`tvb.interfaces.web.controllers.help.help_controller`
	`tvb.interfaces.web.controllers.hpc_controller`
	`tvb.interfaces.web.controllers.kube_controller`
	`tvb.interfaces.web.controllers.project.figure_controller`
	`tvb.interfaces.web.controllers.project.project_controller`
	`tvb.interfaces.web.controllers.settings_controller`
	`tvb.interfaces.web.controllers.simulator.monitors_wizard_handler`
	`tvb.interfaces.web.controllers.simulator.simulator_controller`
	`tvb.interfaces.web.controllers.simulator.simulator_fragment_rendering_rules`
	`tvb.interfaces.web.controllers.simulator.simulator_wizzard_urls`
	`tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller`
	`tvb.interfaces.web.controllers.spatial.local_connectivity_controller`
	`tvb.interfaces.web.controllers.spatial.region_stimulus_controller`
	`tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller`
	`tvb.interfaces.web.controllers.spatial.surface_stimulus_controller`
	`tvb.interfaces.web.controllers.users_controller`
	`tvb.interfaces.web.entities.context_model_parameters`
	`tvb.interfaces.web.entities.context_overlay`
	`tvb.interfaces.web.entities.context_selected_adapter`
	`tvb.interfaces.web.entities.context_simulator`
	`tvb.interfaces.web.entities.context_transfer_vector`
	`tvb.interfaces.web.operation_openshift_assigner`
	`tvb.interfaces.web.request_handler`
	`tvb.interfaces.web.run`
	`tvb.interfaces.web.run_landing_page`
	`tvb.interfaces.web.structure`

	r
	`tvb.rateML`
	`tvb.rateML.generatedModels.epileptor`
	`tvb.rateML.generatedModels.kuramoto`
	`tvb.rateML.generatedModels.montbrio`
	`tvb.rateML.generatedModels.oscillator`
	`tvb.rateML.generatedModels.rwongwang`
	`tvb.rateML.run.model_driver`
	`tvb.rateML.run.model_driver_bold`
	`tvb.rateML.run.model_driver_zerlaut`
	`tvb.rateML.run.regular_run`
	`tvb.rateML.XML2model`

	s
	`tvb.simulator`
	`tvb.simulator.backend`
	`tvb.simulator.backend.base`
	`tvb.simulator.backend.cu`
	`tvb.simulator.backend.nb`
	`tvb.simulator.backend.nb_mpr`
	`tvb.simulator.backend.np`
	`tvb.simulator.backend.ref`
	`tvb.simulator.backend.templates`
	`tvb.simulator.common`
	`tvb.simulator.coupling`
	`tvb.simulator.descriptors`
	`tvb.simulator.history`
	`tvb.simulator.integrators`
	`tvb.simulator.models`
	`tvb.simulator.models.base`
	`tvb.simulator.models.epileptor`
	`tvb.simulator.models.hopfield`
	`tvb.simulator.models.jansen_rit`
	`tvb.simulator.models.larter_breakspear`
	`tvb.simulator.models.linear`
	`tvb.simulator.models.oscillator`
	`tvb.simulator.models.stefanescu_jirsa`
	`tvb.simulator.models.wilson_cowan`
	`tvb.simulator.models.wong_wang`
	`tvb.simulator.monitors`
	`tvb.simulator.noise`
	`tvb.simulator.simulator`
	`tvb.storage`
	`tvb.storage.h5.decorators`
	`tvb.storage.h5.encryption.data_encryption_handler`
	`tvb.storage.h5.encryption.encryption_handler`
	`tvb.storage.h5.encryption.import_export_encryption_handler`
	`tvb.storage.h5.file`
	`tvb.storage.h5.file.exceptions`
	`tvb.storage.h5.file.files_helper`
	`tvb.storage.h5.file.hdf5_storage_manager`
	`tvb.storage.h5.file.xml_metadata_handlers`
	`tvb.storage.h5.utils`
	`tvb.storage.kube`
	`tvb.storage.kube.kube_notifier`
	`tvb.storage.storage_interface`