tvb
Package¶
We want tvb package to extend over at least 3 folders: web framework, scientific library and storage.
Subpackages¶
adapters
Package- Subpackages
analyzers
Packagebct_adapters
bct_centrality_adapters
bct_clustering_adapters
bct_degree_adapters
cross_correlation_adapter
CrossCorrelateAdapter
CrossCorrelateAdapterForm
CrossCorrelateAdapterModel
PearsonCorrelationCoefficientAdapter
PearsonCorrelationCoefficientAdapter.configure()
PearsonCorrelationCoefficientAdapter.get_form_class()
PearsonCorrelationCoefficientAdapter.get_output()
PearsonCorrelationCoefficientAdapter.get_required_disk_size()
PearsonCorrelationCoefficientAdapter.get_required_memory_size()
PearsonCorrelationCoefficientAdapter.launch()
PearsonCorrelationCoefficientAdapterForm
PearsonCorrelationCoefficientAdapterModel
fcd_adapter
FCDAdapterForm
FCDAdapterModel
FunctionalConnectivityDynamicsAdapter
FunctionalConnectivityDynamicsAdapter.configure()
FunctionalConnectivityDynamicsAdapter.get_form_class()
FunctionalConnectivityDynamicsAdapter.get_output()
FunctionalConnectivityDynamicsAdapter.get_required_disk_size()
FunctionalConnectivityDynamicsAdapter.get_required_memory_size()
FunctionalConnectivityDynamicsAdapter.launch()
fmri_balloon_adapter
fourier_adapter
ica_adapter
metrics_group_timeseries
node_coherence_adapter
node_complex_coherence_adapter
NodeComplexCoherenceAdapter
NodeComplexCoherenceAdapter.configure()
NodeComplexCoherenceAdapter.get_form_class()
NodeComplexCoherenceAdapter.get_output()
NodeComplexCoherenceAdapter.get_required_disk_size()
NodeComplexCoherenceAdapter.get_required_memory_size()
NodeComplexCoherenceAdapter.launch()
NodeComplexCoherenceAdapter.result_size()
NodeComplexCoherenceForm
NodeComplexCoherenceModel
NodeComplexCoherenceModel.average_segments
NodeComplexCoherenceModel.detrend_ts
NodeComplexCoherenceModel.epoch_length
NodeComplexCoherenceModel.max_freq
NodeComplexCoherenceModel.npat
NodeComplexCoherenceModel.segment_length
NodeComplexCoherenceModel.segment_shift
NodeComplexCoherenceModel.subtract_epoch_average
NodeComplexCoherenceModel.time_series
NodeComplexCoherenceModel.window_function
NodeComplexCoherenceModel.zeropad
node_covariance_adapter
pca_adapter
wavelet_adapter
ContinuousWaveletTransformAdapter
ContinuousWaveletTransformAdapter.configure()
ContinuousWaveletTransformAdapter.get_form_class()
ContinuousWaveletTransformAdapter.get_output()
ContinuousWaveletTransformAdapter.get_required_disk_size()
ContinuousWaveletTransformAdapter.get_required_memory_size()
ContinuousWaveletTransformAdapter.launch()
ContinuousWaveletTransformAdapter.result_shape()
ContinuousWaveletTransformAdapter.result_size()
ContinuousWaveletTransformAdapterForm
RangeForm
WaveletAdapterModel
creators
Packageallen_creator
AllenConnectModel
AllenConnectomeBuilder
AllenConnectomeBuilderForm
ResolutionOptionsEnum
WeightsOptionsEnum
areas_volume_threshold()
construct_centres()
construct_structural_conn()
construct_tract_lengths()
create_file_order()
dictionary_builder()
download_an_construct_matrix()
infected_threshold()
mouse_brain_visualizer()
parents_and_grandparents_finder()
pms_cleaner()
rotate_reference()
connectivity_creator
local_connectivity_creator
LocalConnectivityCreator
LocalConnectivityCreator.KEY_CUTOFF
LocalConnectivityCreator.KEY_DISPLAY_NAME
LocalConnectivityCreator.KEY_EQUATION
LocalConnectivityCreator.KEY_SURFACE
LocalConnectivityCreator.get_form_class()
LocalConnectivityCreator.get_output()
LocalConnectivityCreator.get_required_disk_size()
LocalConnectivityCreator.get_required_memory_size()
LocalConnectivityCreator.launch()
LocalConnectivityCreatorForm
LocalConnectivityCreatorForm.NAME_EQUATION_PARAMS_DIV
LocalConnectivityCreatorForm.fill_from_trait()
LocalConnectivityCreatorForm.get_filters()
LocalConnectivityCreatorForm.get_input_name()
LocalConnectivityCreatorForm.get_rendering_dict()
LocalConnectivityCreatorForm.get_required_datatype()
LocalConnectivityCreatorForm.get_view_model()
LocalConnectivityCreatorModel
LocalConnectivitySelectorForm
siibra_base
Component2Modality
check_atlas_parcellation_compatible()
create_tvb_connectivity_measure()
create_tvb_structural_connectivity()
get_atlases_for_parcellation()
get_cohorts_for_sc()
get_connectivities_from_kg()
get_connectivity_matrix()
get_connectivity_measures_from_kg()
get_fc_name_from_file_path()
get_functional_connectivity_matrix()
get_hemispheres_for_regions()
get_parcellations_for_atlas()
get_regions_positions()
get_structural_connectivities_from_kg()
init_siibra_params()
parse_subject_ids()
siibra_creator
stimulus_creator
RegionStimulusCreator
RegionStimulusCreatorForm
RegionStimulusCreatorForm.NAME_TEMPORAL_PARAMS_DIV
RegionStimulusCreatorForm.default_temporal
RegionStimulusCreatorForm.fill_from_trait()
RegionStimulusCreatorForm.get_filters()
RegionStimulusCreatorForm.get_input_name()
RegionStimulusCreatorForm.get_rendering_dict()
RegionStimulusCreatorForm.get_required_datatype()
RegionStimulusCreatorForm.get_view_model()
RegionStimulusCreatorModel
StimulusRegionSelectorForm
StimulusSurfaceSelectorForm
SurfaceStimulusCreator
SurfaceStimulusCreator.KEY_FOCAL_POINTS_TRIANGLES
SurfaceStimulusCreator.KEY_SPATIAL
SurfaceStimulusCreator.KEY_SURFACE
SurfaceStimulusCreator.KEY_TEMPORAL
SurfaceStimulusCreator.get_form_class()
SurfaceStimulusCreator.get_output()
SurfaceStimulusCreator.get_required_disk_size()
SurfaceStimulusCreator.get_required_memory_size()
SurfaceStimulusCreator.launch()
SurfaceStimulusCreator.launch_mode
SurfaceStimulusCreator.prepare_stimuli_surface_from_view_model()
SurfaceStimulusCreatorForm
SurfaceStimulusCreatorForm.NAME_SPATIAL_PARAMS_DIV
SurfaceStimulusCreatorForm.NAME_TEMPORAL_PARAMS_DIV
SurfaceStimulusCreatorForm.default_spatial
SurfaceStimulusCreatorForm.default_temporal
SurfaceStimulusCreatorForm.fill_from_trait()
SurfaceStimulusCreatorForm.get_filters()
SurfaceStimulusCreatorForm.get_input_name()
SurfaceStimulusCreatorForm.get_rendering_dict()
SurfaceStimulusCreatorForm.get_required_datatype()
SurfaceStimulusCreatorForm.get_view_model()
SurfaceStimulusCreatorModel
datatypes
Package- Subpackages
db
Packageannotation
AnnotationTerm
ConnectivityAnnotationsIndex
ConnectivityAnnotationsIndex.annotations_length
ConnectivityAnnotationsIndex.connectivity
ConnectivityAnnotationsIndex.create_date
ConnectivityAnnotationsIndex.disk_size
ConnectivityAnnotationsIndex.fill_from_has_traits()
ConnectivityAnnotationsIndex.fk_connectivity_gid
ConnectivityAnnotationsIndex.fk_datatype_group
ConnectivityAnnotationsIndex.fk_from_operation
ConnectivityAnnotationsIndex.fk_parent_burst
ConnectivityAnnotationsIndex.gid
ConnectivityAnnotationsIndex.id
ConnectivityAnnotationsIndex.invalid
ConnectivityAnnotationsIndex.is_nan
ConnectivityAnnotationsIndex.module
ConnectivityAnnotationsIndex.parent_operation
ConnectivityAnnotationsIndex.state
ConnectivityAnnotationsIndex.subject
ConnectivityAnnotationsIndex.title
ConnectivityAnnotationsIndex.type
ConnectivityAnnotationsIndex.type_
ConnectivityAnnotationsIndex.user_tag_1
ConnectivityAnnotationsIndex.user_tag_2
ConnectivityAnnotationsIndex.user_tag_3
ConnectivityAnnotationsIndex.user_tag_4
ConnectivityAnnotationsIndex.user_tag_5
ConnectivityAnnotationsIndex.visible
connectivity
ConnectivityIndex
ConnectivityIndex.accepted_filters()
ConnectivityIndex.create_date
ConnectivityIndex.disk_size
ConnectivityIndex.display_name
ConnectivityIndex.fill_from_has_traits()
ConnectivityIndex.fk_datatype_group
ConnectivityIndex.fk_from_operation
ConnectivityIndex.fk_parent_burst
ConnectivityIndex.gid
ConnectivityIndex.has_cortical_mask
ConnectivityIndex.has_hemispheres_mask
ConnectivityIndex.id
ConnectivityIndex.invalid
ConnectivityIndex.is_nan
ConnectivityIndex.module
ConnectivityIndex.number_of_connections
ConnectivityIndex.number_of_regions
ConnectivityIndex.parent_operation
ConnectivityIndex.state
ConnectivityIndex.subject
ConnectivityIndex.title
ConnectivityIndex.tract_lengths_max
ConnectivityIndex.tract_lengths_mean
ConnectivityIndex.tract_lengths_min
ConnectivityIndex.type
ConnectivityIndex.type_
ConnectivityIndex.undirected
ConnectivityIndex.user_tag_1
ConnectivityIndex.user_tag_2
ConnectivityIndex.user_tag_3
ConnectivityIndex.user_tag_4
ConnectivityIndex.user_tag_5
ConnectivityIndex.visible
ConnectivityIndex.weights_max
ConnectivityIndex.weights_mean
ConnectivityIndex.weights_min
fcd
FcdIndex
FcdIndex.array_data_max
FcdIndex.array_data_mean
FcdIndex.array_data_min
FcdIndex.array_has_complex
FcdIndex.array_is_finite
FcdIndex.create_date
FcdIndex.disk_size
FcdIndex.fill_from_has_traits()
FcdIndex.fk_datatype_group
FcdIndex.fk_from_operation
FcdIndex.fk_parent_burst
FcdIndex.fk_source_gid
FcdIndex.get_extra_info()
FcdIndex.gid
FcdIndex.has_valid_time_series
FcdIndex.has_volume_mapping
FcdIndex.id
FcdIndex.invalid
FcdIndex.is_nan
FcdIndex.labels_ordering
FcdIndex.module
FcdIndex.ndim
FcdIndex.parent_operation
FcdIndex.shape
FcdIndex.source
FcdIndex.state
FcdIndex.subject
FcdIndex.subtype
FcdIndex.title
FcdIndex.type
FcdIndex.type_
FcdIndex.user_tag_1
FcdIndex.user_tag_2
FcdIndex.user_tag_3
FcdIndex.user_tag_4
FcdIndex.user_tag_5
FcdIndex.visible
graph
ConnectivityMeasureIndex
ConnectivityMeasureIndex.array_data_max
ConnectivityMeasureIndex.array_data_mean
ConnectivityMeasureIndex.array_data_min
ConnectivityMeasureIndex.array_has_complex
ConnectivityMeasureIndex.array_is_finite
ConnectivityMeasureIndex.connectivity
ConnectivityMeasureIndex.create_date
ConnectivityMeasureIndex.disk_size
ConnectivityMeasureIndex.display_name
ConnectivityMeasureIndex.fill_from_h5()
ConnectivityMeasureIndex.fill_from_has_traits()
ConnectivityMeasureIndex.fk_connectivity_gid
ConnectivityMeasureIndex.fk_datatype_group
ConnectivityMeasureIndex.fk_from_operation
ConnectivityMeasureIndex.fk_parent_burst
ConnectivityMeasureIndex.gid
ConnectivityMeasureIndex.has_surface_mapping
ConnectivityMeasureIndex.has_valid_time_series
ConnectivityMeasureIndex.has_volume_mapping
ConnectivityMeasureIndex.id
ConnectivityMeasureIndex.invalid
ConnectivityMeasureIndex.is_nan
ConnectivityMeasureIndex.module
ConnectivityMeasureIndex.ndim
ConnectivityMeasureIndex.parent_operation
ConnectivityMeasureIndex.shape
ConnectivityMeasureIndex.state
ConnectivityMeasureIndex.subject
ConnectivityMeasureIndex.subtype
ConnectivityMeasureIndex.title
ConnectivityMeasureIndex.type
ConnectivityMeasureIndex.type_
ConnectivityMeasureIndex.user_tag_1
ConnectivityMeasureIndex.user_tag_2
ConnectivityMeasureIndex.user_tag_3
ConnectivityMeasureIndex.user_tag_4
ConnectivityMeasureIndex.user_tag_5
ConnectivityMeasureIndex.visible
CorrelationCoefficientsIndex
CorrelationCoefficientsIndex.array_data_max
CorrelationCoefficientsIndex.array_data_mean
CorrelationCoefficientsIndex.array_data_min
CorrelationCoefficientsIndex.array_has_complex
CorrelationCoefficientsIndex.array_is_finite
CorrelationCoefficientsIndex.create_date
CorrelationCoefficientsIndex.disk_size
CorrelationCoefficientsIndex.fill_from_has_traits()
CorrelationCoefficientsIndex.fk_datatype_group
CorrelationCoefficientsIndex.fk_from_operation
CorrelationCoefficientsIndex.fk_parent_burst
CorrelationCoefficientsIndex.fk_source_gid
CorrelationCoefficientsIndex.get_extra_info()
CorrelationCoefficientsIndex.gid
CorrelationCoefficientsIndex.has_valid_time_series
CorrelationCoefficientsIndex.has_volume_mapping
CorrelationCoefficientsIndex.id
CorrelationCoefficientsIndex.invalid
CorrelationCoefficientsIndex.is_nan
CorrelationCoefficientsIndex.labels_ordering
CorrelationCoefficientsIndex.module
CorrelationCoefficientsIndex.ndim
CorrelationCoefficientsIndex.parent_operation
CorrelationCoefficientsIndex.shape
CorrelationCoefficientsIndex.source
CorrelationCoefficientsIndex.state
CorrelationCoefficientsIndex.subject
CorrelationCoefficientsIndex.subtype
CorrelationCoefficientsIndex.title
CorrelationCoefficientsIndex.type
CorrelationCoefficientsIndex.type_
CorrelationCoefficientsIndex.user_tag_1
CorrelationCoefficientsIndex.user_tag_2
CorrelationCoefficientsIndex.user_tag_3
CorrelationCoefficientsIndex.user_tag_4
CorrelationCoefficientsIndex.user_tag_5
CorrelationCoefficientsIndex.visible
CovarianceIndex
CovarianceIndex.array_data_max
CovarianceIndex.array_data_mean
CovarianceIndex.array_data_min
CovarianceIndex.array_has_complex
CovarianceIndex.array_is_finite
CovarianceIndex.create_date
CovarianceIndex.disk_size
CovarianceIndex.fill_from_has_traits()
CovarianceIndex.fk_datatype_group
CovarianceIndex.fk_from_operation
CovarianceIndex.fk_parent_burst
CovarianceIndex.fk_source_gid
CovarianceIndex.gid
CovarianceIndex.has_valid_time_series
CovarianceIndex.has_volume_mapping
CovarianceIndex.id
CovarianceIndex.invalid
CovarianceIndex.is_nan
CovarianceIndex.module
CovarianceIndex.ndim
CovarianceIndex.parent_operation
CovarianceIndex.shape
CovarianceIndex.source
CovarianceIndex.state
CovarianceIndex.subject
CovarianceIndex.subtype
CovarianceIndex.title
CovarianceIndex.type
CovarianceIndex.type_
CovarianceIndex.user_tag_1
CovarianceIndex.user_tag_2
CovarianceIndex.user_tag_3
CovarianceIndex.user_tag_4
CovarianceIndex.user_tag_5
CovarianceIndex.visible
local_connectivity
LocalConnectivityIndex
LocalConnectivityIndex.create_date
LocalConnectivityIndex.disk_size
LocalConnectivityIndex.fill_from_has_traits()
LocalConnectivityIndex.fk_datatype_group
LocalConnectivityIndex.fk_from_operation
LocalConnectivityIndex.fk_parent_burst
LocalConnectivityIndex.fk_surface_gid
LocalConnectivityIndex.gid
LocalConnectivityIndex.id
LocalConnectivityIndex.invalid
LocalConnectivityIndex.is_nan
LocalConnectivityIndex.matrix_non_zero_max
LocalConnectivityIndex.matrix_non_zero_mean
LocalConnectivityIndex.matrix_non_zero_min
LocalConnectivityIndex.module
LocalConnectivityIndex.parent_operation
LocalConnectivityIndex.state
LocalConnectivityIndex.subject
LocalConnectivityIndex.surface
LocalConnectivityIndex.title
LocalConnectivityIndex.type
LocalConnectivityIndex.type_
LocalConnectivityIndex.user_tag_1
LocalConnectivityIndex.user_tag_2
LocalConnectivityIndex.user_tag_3
LocalConnectivityIndex.user_tag_4
LocalConnectivityIndex.user_tag_5
LocalConnectivityIndex.visible
mapped_value
DatatypeMeasureIndex
DatatypeMeasureIndex.create_date
DatatypeMeasureIndex.disk_size
DatatypeMeasureIndex.display_name
DatatypeMeasureIndex.fill_from_has_traits()
DatatypeMeasureIndex.fk_datatype_group
DatatypeMeasureIndex.fk_from_operation
DatatypeMeasureIndex.fk_parent_burst
DatatypeMeasureIndex.fk_source_gid
DatatypeMeasureIndex.gid
DatatypeMeasureIndex.id
DatatypeMeasureIndex.invalid
DatatypeMeasureIndex.is_nan
DatatypeMeasureIndex.metrics
DatatypeMeasureIndex.module
DatatypeMeasureIndex.parent_operation
DatatypeMeasureIndex.source
DatatypeMeasureIndex.state
DatatypeMeasureIndex.subject
DatatypeMeasureIndex.title
DatatypeMeasureIndex.type
DatatypeMeasureIndex.type_
DatatypeMeasureIndex.user_tag_1
DatatypeMeasureIndex.user_tag_2
DatatypeMeasureIndex.user_tag_3
DatatypeMeasureIndex.user_tag_4
DatatypeMeasureIndex.user_tag_5
DatatypeMeasureIndex.visible
ValueWrapperIndex
ValueWrapperIndex.create_date
ValueWrapperIndex.data_name
ValueWrapperIndex.data_type
ValueWrapperIndex.data_value
ValueWrapperIndex.disk_size
ValueWrapperIndex.display_name
ValueWrapperIndex.fill_from_has_traits()
ValueWrapperIndex.fk_datatype_group
ValueWrapperIndex.fk_from_operation
ValueWrapperIndex.fk_parent_burst
ValueWrapperIndex.gid
ValueWrapperIndex.id
ValueWrapperIndex.invalid
ValueWrapperIndex.is_nan
ValueWrapperIndex.module
ValueWrapperIndex.parent_operation
ValueWrapperIndex.state
ValueWrapperIndex.subject
ValueWrapperIndex.title
ValueWrapperIndex.type
ValueWrapperIndex.type_
ValueWrapperIndex.user_tag_1
ValueWrapperIndex.user_tag_2
ValueWrapperIndex.user_tag_3
ValueWrapperIndex.user_tag_4
ValueWrapperIndex.user_tag_5
ValueWrapperIndex.visible
mode_decompositions
IndependentComponentsIndex
IndependentComponentsIndex.array_has_complex
IndependentComponentsIndex.create_date
IndependentComponentsIndex.disk_size
IndependentComponentsIndex.fill_from_has_traits()
IndependentComponentsIndex.fk_datatype_group
IndependentComponentsIndex.fk_from_operation
IndependentComponentsIndex.fk_parent_burst
IndependentComponentsIndex.fk_source_gid
IndependentComponentsIndex.get_extra_info()
IndependentComponentsIndex.gid
IndependentComponentsIndex.id
IndependentComponentsIndex.invalid
IndependentComponentsIndex.is_nan
IndependentComponentsIndex.module
IndependentComponentsIndex.ndim
IndependentComponentsIndex.parent_operation
IndependentComponentsIndex.parsed_shape
IndependentComponentsIndex.shape
IndependentComponentsIndex.source
IndependentComponentsIndex.state
IndependentComponentsIndex.subject
IndependentComponentsIndex.title
IndependentComponentsIndex.type
IndependentComponentsIndex.type_
IndependentComponentsIndex.user_tag_1
IndependentComponentsIndex.user_tag_2
IndependentComponentsIndex.user_tag_3
IndependentComponentsIndex.user_tag_4
IndependentComponentsIndex.user_tag_5
IndependentComponentsIndex.visible
PrincipalComponentsIndex
PrincipalComponentsIndex.create_date
PrincipalComponentsIndex.disk_size
PrincipalComponentsIndex.fill_from_has_traits()
PrincipalComponentsIndex.fk_datatype_group
PrincipalComponentsIndex.fk_from_operation
PrincipalComponentsIndex.fk_parent_burst
PrincipalComponentsIndex.fk_source_gid
PrincipalComponentsIndex.get_extra_info()
PrincipalComponentsIndex.gid
PrincipalComponentsIndex.id
PrincipalComponentsIndex.invalid
PrincipalComponentsIndex.is_nan
PrincipalComponentsIndex.module
PrincipalComponentsIndex.parent_operation
PrincipalComponentsIndex.source
PrincipalComponentsIndex.state
PrincipalComponentsIndex.subject
PrincipalComponentsIndex.title
PrincipalComponentsIndex.type
PrincipalComponentsIndex.type_
PrincipalComponentsIndex.user_tag_1
PrincipalComponentsIndex.user_tag_2
PrincipalComponentsIndex.user_tag_3
PrincipalComponentsIndex.user_tag_4
PrincipalComponentsIndex.user_tag_5
PrincipalComponentsIndex.visible
patterns
SpatioTemporalPatternIndex
SpatioTemporalPatternIndex.create_date
SpatioTemporalPatternIndex.disk_size
SpatioTemporalPatternIndex.fill_from_has_traits()
SpatioTemporalPatternIndex.fk_datatype_group
SpatioTemporalPatternIndex.fk_from_operation
SpatioTemporalPatternIndex.fk_parent_burst
SpatioTemporalPatternIndex.gid
SpatioTemporalPatternIndex.id
SpatioTemporalPatternIndex.invalid
SpatioTemporalPatternIndex.is_nan
SpatioTemporalPatternIndex.module
SpatioTemporalPatternIndex.parent_operation
SpatioTemporalPatternIndex.spatial_equation
SpatioTemporalPatternIndex.spatial_parameters
SpatioTemporalPatternIndex.state
SpatioTemporalPatternIndex.subject
SpatioTemporalPatternIndex.temporal_equation
SpatioTemporalPatternIndex.temporal_parameters
SpatioTemporalPatternIndex.title
SpatioTemporalPatternIndex.type
SpatioTemporalPatternIndex.type_
SpatioTemporalPatternIndex.user_tag_1
SpatioTemporalPatternIndex.user_tag_2
SpatioTemporalPatternIndex.user_tag_3
SpatioTemporalPatternIndex.user_tag_4
SpatioTemporalPatternIndex.user_tag_5
SpatioTemporalPatternIndex.visible
StimuliRegionIndex
StimuliRegionIndex.connectivity
StimuliRegionIndex.create_date
StimuliRegionIndex.disk_size
StimuliRegionIndex.fill_from_has_traits()
StimuliRegionIndex.fk_connectivity_gid
StimuliRegionIndex.fk_datatype_group
StimuliRegionIndex.fk_from_operation
StimuliRegionIndex.fk_parent_burst
StimuliRegionIndex.gid
StimuliRegionIndex.id
StimuliRegionIndex.invalid
StimuliRegionIndex.is_nan
StimuliRegionIndex.module
StimuliRegionIndex.parent_operation
StimuliRegionIndex.spatial_equation
StimuliRegionIndex.spatial_parameters
StimuliRegionIndex.state
StimuliRegionIndex.subject
StimuliRegionIndex.temporal_equation
StimuliRegionIndex.temporal_parameters
StimuliRegionIndex.title
StimuliRegionIndex.type
StimuliRegionIndex.type_
StimuliRegionIndex.user_tag_1
StimuliRegionIndex.user_tag_2
StimuliRegionIndex.user_tag_3
StimuliRegionIndex.user_tag_4
StimuliRegionIndex.user_tag_5
StimuliRegionIndex.visible
StimuliSurfaceIndex
StimuliSurfaceIndex.create_date
StimuliSurfaceIndex.disk_size
StimuliSurfaceIndex.fill_from_has_traits()
StimuliSurfaceIndex.fk_datatype_group
StimuliSurfaceIndex.fk_from_operation
StimuliSurfaceIndex.fk_parent_burst
StimuliSurfaceIndex.fk_surface_gid
StimuliSurfaceIndex.gid
StimuliSurfaceIndex.id
StimuliSurfaceIndex.invalid
StimuliSurfaceIndex.is_nan
StimuliSurfaceIndex.module
StimuliSurfaceIndex.parent_operation
StimuliSurfaceIndex.spatial_equation
StimuliSurfaceIndex.spatial_parameters
StimuliSurfaceIndex.state
StimuliSurfaceIndex.subject
StimuliSurfaceIndex.surface
StimuliSurfaceIndex.temporal_equation
StimuliSurfaceIndex.temporal_parameters
StimuliSurfaceIndex.title
StimuliSurfaceIndex.type
StimuliSurfaceIndex.type_
StimuliSurfaceIndex.user_tag_1
StimuliSurfaceIndex.user_tag_2
StimuliSurfaceIndex.user_tag_3
StimuliSurfaceIndex.user_tag_4
StimuliSurfaceIndex.user_tag_5
StimuliSurfaceIndex.visible
projections
ProjectionMatrixIndex
ProjectionMatrixIndex.brain_skull
ProjectionMatrixIndex.create_date
ProjectionMatrixIndex.disk_size
ProjectionMatrixIndex.display_name
ProjectionMatrixIndex.fill_from_has_traits()
ProjectionMatrixIndex.fk_brain_skull_gid
ProjectionMatrixIndex.fk_datatype_group
ProjectionMatrixIndex.fk_from_operation
ProjectionMatrixIndex.fk_parent_burst
ProjectionMatrixIndex.fk_sensors_gid
ProjectionMatrixIndex.fk_skin_air_gid
ProjectionMatrixIndex.fk_skull_skin_gid
ProjectionMatrixIndex.fk_source_gid
ProjectionMatrixIndex.get_subtype_attr()
ProjectionMatrixIndex.gid
ProjectionMatrixIndex.id
ProjectionMatrixIndex.invalid
ProjectionMatrixIndex.is_nan
ProjectionMatrixIndex.module
ProjectionMatrixIndex.parent_operation
ProjectionMatrixIndex.projection_type
ProjectionMatrixIndex.sensors
ProjectionMatrixIndex.skin_air
ProjectionMatrixIndex.skull_skin
ProjectionMatrixIndex.source
ProjectionMatrixIndex.state
ProjectionMatrixIndex.subject
ProjectionMatrixIndex.title
ProjectionMatrixIndex.type
ProjectionMatrixIndex.type_
ProjectionMatrixIndex.user_tag_1
ProjectionMatrixIndex.user_tag_2
ProjectionMatrixIndex.user_tag_3
ProjectionMatrixIndex.user_tag_4
ProjectionMatrixIndex.user_tag_5
ProjectionMatrixIndex.visible
region_mapping
RegionMappingIndex
RegionMappingIndex.after_store()
RegionMappingIndex.array_data_max
RegionMappingIndex.array_data_mean
RegionMappingIndex.array_data_min
RegionMappingIndex.connectivity
RegionMappingIndex.create_date
RegionMappingIndex.disk_size
RegionMappingIndex.fill_from_has_traits()
RegionMappingIndex.fk_connectivity_gid
RegionMappingIndex.fk_datatype_group
RegionMappingIndex.fk_from_operation
RegionMappingIndex.fk_parent_burst
RegionMappingIndex.fk_surface_gid
RegionMappingIndex.gid
RegionMappingIndex.id
RegionMappingIndex.invalid
RegionMappingIndex.is_nan
RegionMappingIndex.module
RegionMappingIndex.parent_operation
RegionMappingIndex.state
RegionMappingIndex.subject
RegionMappingIndex.surface
RegionMappingIndex.title
RegionMappingIndex.type
RegionMappingIndex.type_
RegionMappingIndex.user_tag_1
RegionMappingIndex.user_tag_2
RegionMappingIndex.user_tag_3
RegionMappingIndex.user_tag_4
RegionMappingIndex.user_tag_5
RegionMappingIndex.visible
RegionVolumeMappingIndex
RegionVolumeMappingIndex.after_store()
RegionVolumeMappingIndex.array_data_max
RegionVolumeMappingIndex.array_data_mean
RegionVolumeMappingIndex.array_data_min
RegionVolumeMappingIndex.array_has_complex
RegionVolumeMappingIndex.array_is_finite
RegionVolumeMappingIndex.connectivity
RegionVolumeMappingIndex.create_date
RegionVolumeMappingIndex.disk_size
RegionVolumeMappingIndex.fill_from_has_traits()
RegionVolumeMappingIndex.fk_connectivity_gid
RegionVolumeMappingIndex.fk_datatype_group
RegionVolumeMappingIndex.fk_from_operation
RegionVolumeMappingIndex.fk_parent_burst
RegionVolumeMappingIndex.fk_volume_gid
RegionVolumeMappingIndex.gid
RegionVolumeMappingIndex.has_valid_time_series
RegionVolumeMappingIndex.has_volume_mapping
RegionVolumeMappingIndex.id
RegionVolumeMappingIndex.invalid
RegionVolumeMappingIndex.is_nan
RegionVolumeMappingIndex.module
RegionVolumeMappingIndex.ndim
RegionVolumeMappingIndex.parent_operation
RegionVolumeMappingIndex.shape
RegionVolumeMappingIndex.state
RegionVolumeMappingIndex.subject
RegionVolumeMappingIndex.subtype
RegionVolumeMappingIndex.title
RegionVolumeMappingIndex.type
RegionVolumeMappingIndex.type_
RegionVolumeMappingIndex.user_tag_1
RegionVolumeMappingIndex.user_tag_2
RegionVolumeMappingIndex.user_tag_3
RegionVolumeMappingIndex.user_tag_4
RegionVolumeMappingIndex.user_tag_5
RegionVolumeMappingIndex.visible
RegionVolumeMappingIndex.volume
sensors
SensorsIndex
SensorsIndex.create_date
SensorsIndex.disk_size
SensorsIndex.display_name
SensorsIndex.fill_from_has_traits()
SensorsIndex.fk_datatype_group
SensorsIndex.fk_from_operation
SensorsIndex.fk_parent_burst
SensorsIndex.get_subtype_attr()
SensorsIndex.gid
SensorsIndex.id
SensorsIndex.invalid
SensorsIndex.is_nan
SensorsIndex.module
SensorsIndex.number_of_sensors
SensorsIndex.parent_operation
SensorsIndex.sensors_type
SensorsIndex.state
SensorsIndex.subject
SensorsIndex.title
SensorsIndex.type
SensorsIndex.type_
SensorsIndex.user_tag_1
SensorsIndex.user_tag_2
SensorsIndex.user_tag_3
SensorsIndex.user_tag_4
SensorsIndex.user_tag_5
SensorsIndex.visible
simulation_history
SimulationHistoryIndex
SimulationHistoryIndex.create_date
SimulationHistoryIndex.disk_size
SimulationHistoryIndex.fill_from_has_traits()
SimulationHistoryIndex.fk_datatype_group
SimulationHistoryIndex.fk_from_operation
SimulationHistoryIndex.fk_parent_burst
SimulationHistoryIndex.gid
SimulationHistoryIndex.id
SimulationHistoryIndex.invalid
SimulationHistoryIndex.is_nan
SimulationHistoryIndex.module
SimulationHistoryIndex.parent_operation
SimulationHistoryIndex.state
SimulationHistoryIndex.subject
SimulationHistoryIndex.title
SimulationHistoryIndex.type
SimulationHistoryIndex.type_
SimulationHistoryIndex.user_tag_1
SimulationHistoryIndex.user_tag_2
SimulationHistoryIndex.user_tag_3
SimulationHistoryIndex.user_tag_4
SimulationHistoryIndex.user_tag_5
SimulationHistoryIndex.visible
spectral
CoherenceSpectrumIndex
CoherenceSpectrumIndex.array_data_max
CoherenceSpectrumIndex.array_data_mean
CoherenceSpectrumIndex.array_data_min
CoherenceSpectrumIndex.array_has_complex
CoherenceSpectrumIndex.array_is_finite
CoherenceSpectrumIndex.create_date
CoherenceSpectrumIndex.disk_size
CoherenceSpectrumIndex.fill_from_has_traits()
CoherenceSpectrumIndex.fk_datatype_group
CoherenceSpectrumIndex.fk_from_operation
CoherenceSpectrumIndex.fk_parent_burst
CoherenceSpectrumIndex.fk_source_gid
CoherenceSpectrumIndex.frequencies_max
CoherenceSpectrumIndex.frequencies_min
CoherenceSpectrumIndex.get_extra_info()
CoherenceSpectrumIndex.gid
CoherenceSpectrumIndex.has_valid_time_series
CoherenceSpectrumIndex.has_volume_mapping
CoherenceSpectrumIndex.id
CoherenceSpectrumIndex.invalid
CoherenceSpectrumIndex.is_nan
CoherenceSpectrumIndex.module
CoherenceSpectrumIndex.ndim
CoherenceSpectrumIndex.nfft
CoherenceSpectrumIndex.parent_operation
CoherenceSpectrumIndex.shape
CoherenceSpectrumIndex.source
CoherenceSpectrumIndex.state
CoherenceSpectrumIndex.subject
CoherenceSpectrumIndex.subtype
CoherenceSpectrumIndex.title
CoherenceSpectrumIndex.type
CoherenceSpectrumIndex.type_
CoherenceSpectrumIndex.user_tag_1
CoherenceSpectrumIndex.user_tag_2
CoherenceSpectrumIndex.user_tag_3
CoherenceSpectrumIndex.user_tag_4
CoherenceSpectrumIndex.user_tag_5
CoherenceSpectrumIndex.visible
ComplexCoherenceSpectrumIndex
ComplexCoherenceSpectrumIndex.array_data_max
ComplexCoherenceSpectrumIndex.array_data_mean
ComplexCoherenceSpectrumIndex.array_data_min
ComplexCoherenceSpectrumIndex.array_has_complex
ComplexCoherenceSpectrumIndex.array_is_finite
ComplexCoherenceSpectrumIndex.create_date
ComplexCoherenceSpectrumIndex.disk_size
ComplexCoherenceSpectrumIndex.epoch_length
ComplexCoherenceSpectrumIndex.fill_from_has_traits()
ComplexCoherenceSpectrumIndex.fk_datatype_group
ComplexCoherenceSpectrumIndex.fk_from_operation
ComplexCoherenceSpectrumIndex.fk_parent_burst
ComplexCoherenceSpectrumIndex.fk_source_gid
ComplexCoherenceSpectrumIndex.frequency_step
ComplexCoherenceSpectrumIndex.get_extra_info()
ComplexCoherenceSpectrumIndex.gid
ComplexCoherenceSpectrumIndex.has_valid_time_series
ComplexCoherenceSpectrumIndex.has_volume_mapping
ComplexCoherenceSpectrumIndex.id
ComplexCoherenceSpectrumIndex.invalid
ComplexCoherenceSpectrumIndex.is_nan
ComplexCoherenceSpectrumIndex.max_frequency
ComplexCoherenceSpectrumIndex.module
ComplexCoherenceSpectrumIndex.ndim
ComplexCoherenceSpectrumIndex.parent_operation
ComplexCoherenceSpectrumIndex.segment_length
ComplexCoherenceSpectrumIndex.shape
ComplexCoherenceSpectrumIndex.source
ComplexCoherenceSpectrumIndex.state
ComplexCoherenceSpectrumIndex.subject
ComplexCoherenceSpectrumIndex.subtype
ComplexCoherenceSpectrumIndex.title
ComplexCoherenceSpectrumIndex.type
ComplexCoherenceSpectrumIndex.type_
ComplexCoherenceSpectrumIndex.user_tag_1
ComplexCoherenceSpectrumIndex.user_tag_2
ComplexCoherenceSpectrumIndex.user_tag_3
ComplexCoherenceSpectrumIndex.user_tag_4
ComplexCoherenceSpectrumIndex.user_tag_5
ComplexCoherenceSpectrumIndex.visible
ComplexCoherenceSpectrumIndex.windowing_function
FourierSpectrumIndex
FourierSpectrumIndex.array_data_max
FourierSpectrumIndex.array_data_mean
FourierSpectrumIndex.array_data_min
FourierSpectrumIndex.array_has_complex
FourierSpectrumIndex.array_is_finite
FourierSpectrumIndex.create_date
FourierSpectrumIndex.disk_size
FourierSpectrumIndex.fill_from_has_traits()
FourierSpectrumIndex.fk_datatype_group
FourierSpectrumIndex.fk_from_operation
FourierSpectrumIndex.fk_parent_burst
FourierSpectrumIndex.fk_source_gid
FourierSpectrumIndex.frequency_step
FourierSpectrumIndex.get_extra_info()
FourierSpectrumIndex.gid
FourierSpectrumIndex.has_valid_time_series
FourierSpectrumIndex.has_volume_mapping
FourierSpectrumIndex.id
FourierSpectrumIndex.invalid
FourierSpectrumIndex.is_nan
FourierSpectrumIndex.max_frequency
FourierSpectrumIndex.module
FourierSpectrumIndex.ndim
FourierSpectrumIndex.parent_operation
FourierSpectrumIndex.segment_length
FourierSpectrumIndex.shape
FourierSpectrumIndex.source
FourierSpectrumIndex.state
FourierSpectrumIndex.subject
FourierSpectrumIndex.subtype
FourierSpectrumIndex.title
FourierSpectrumIndex.type
FourierSpectrumIndex.type_
FourierSpectrumIndex.user_tag_1
FourierSpectrumIndex.user_tag_2
FourierSpectrumIndex.user_tag_3
FourierSpectrumIndex.user_tag_4
FourierSpectrumIndex.user_tag_5
FourierSpectrumIndex.visible
FourierSpectrumIndex.windowing_function
WaveletCoefficientsIndex
WaveletCoefficientsIndex.array_data_max
WaveletCoefficientsIndex.array_data_mean
WaveletCoefficientsIndex.array_data_min
WaveletCoefficientsIndex.array_has_complex
WaveletCoefficientsIndex.array_is_finite
WaveletCoefficientsIndex.create_date
WaveletCoefficientsIndex.disk_size
WaveletCoefficientsIndex.fill_from_has_traits()
WaveletCoefficientsIndex.fk_datatype_group
WaveletCoefficientsIndex.fk_from_operation
WaveletCoefficientsIndex.fk_parent_burst
WaveletCoefficientsIndex.fk_source_gid
WaveletCoefficientsIndex.frequencies_max
WaveletCoefficientsIndex.frequencies_min
WaveletCoefficientsIndex.get_extra_info()
WaveletCoefficientsIndex.gid
WaveletCoefficientsIndex.has_valid_time_series
WaveletCoefficientsIndex.has_volume_mapping
WaveletCoefficientsIndex.id
WaveletCoefficientsIndex.invalid
WaveletCoefficientsIndex.is_nan
WaveletCoefficientsIndex.module
WaveletCoefficientsIndex.mother
WaveletCoefficientsIndex.ndim
WaveletCoefficientsIndex.normalisation
WaveletCoefficientsIndex.number_of_scales
WaveletCoefficientsIndex.parent_operation
WaveletCoefficientsIndex.q_ratio
WaveletCoefficientsIndex.sample_period
WaveletCoefficientsIndex.shape
WaveletCoefficientsIndex.source
WaveletCoefficientsIndex.state
WaveletCoefficientsIndex.subject
WaveletCoefficientsIndex.subtype
WaveletCoefficientsIndex.title
WaveletCoefficientsIndex.type
WaveletCoefficientsIndex.type_
WaveletCoefficientsIndex.user_tag_1
WaveletCoefficientsIndex.user_tag_2
WaveletCoefficientsIndex.user_tag_3
WaveletCoefficientsIndex.user_tag_4
WaveletCoefficientsIndex.user_tag_5
WaveletCoefficientsIndex.visible
structural
StructuralMRIIndex
StructuralMRIIndex.array_data_max
StructuralMRIIndex.array_data_mean
StructuralMRIIndex.array_data_min
StructuralMRIIndex.array_has_complex
StructuralMRIIndex.array_is_finite
StructuralMRIIndex.create_date
StructuralMRIIndex.disk_size
StructuralMRIIndex.fill_from_has_traits()
StructuralMRIIndex.fk_datatype_group
StructuralMRIIndex.fk_from_operation
StructuralMRIIndex.fk_parent_burst
StructuralMRIIndex.fk_volume_gid
StructuralMRIIndex.gid
StructuralMRIIndex.has_valid_time_series
StructuralMRIIndex.has_volume_mapping
StructuralMRIIndex.id
StructuralMRIIndex.invalid
StructuralMRIIndex.is_nan
StructuralMRIIndex.module
StructuralMRIIndex.ndim
StructuralMRIIndex.parent_operation
StructuralMRIIndex.shape
StructuralMRIIndex.state
StructuralMRIIndex.subject
StructuralMRIIndex.subtype
StructuralMRIIndex.title
StructuralMRIIndex.type
StructuralMRIIndex.type_
StructuralMRIIndex.user_tag_1
StructuralMRIIndex.user_tag_2
StructuralMRIIndex.user_tag_3
StructuralMRIIndex.user_tag_4
StructuralMRIIndex.user_tag_5
StructuralMRIIndex.visible
StructuralMRIIndex.volume
StructuralMRIIndex.weighting
surface
SurfaceIndex
SurfaceIndex.bi_hemispheric
SurfaceIndex.create_date
SurfaceIndex.disk_size
SurfaceIndex.display_name
SurfaceIndex.edge_max_length
SurfaceIndex.edge_mean_length
SurfaceIndex.edge_min_length
SurfaceIndex.fill_from_has_traits()
SurfaceIndex.fk_datatype_group
SurfaceIndex.fk_from_operation
SurfaceIndex.fk_parent_burst
SurfaceIndex.get_subtype_attr()
SurfaceIndex.gid
SurfaceIndex.id
SurfaceIndex.invalid
SurfaceIndex.is_nan
SurfaceIndex.module
SurfaceIndex.number_of_edges
SurfaceIndex.number_of_triangles
SurfaceIndex.number_of_vertices
SurfaceIndex.parent_operation
SurfaceIndex.state
SurfaceIndex.subject
SurfaceIndex.surface_type
SurfaceIndex.title
SurfaceIndex.type
SurfaceIndex.type_
SurfaceIndex.user_tag_1
SurfaceIndex.user_tag_2
SurfaceIndex.user_tag_3
SurfaceIndex.user_tag_4
SurfaceIndex.user_tag_5
SurfaceIndex.valid_for_simulations
SurfaceIndex.visible
temporal_correlations
CrossCorrelationIndex
CrossCorrelationIndex.array_data_max
CrossCorrelationIndex.array_data_mean
CrossCorrelationIndex.array_data_min
CrossCorrelationIndex.array_has_complex
CrossCorrelationIndex.array_is_finite
CrossCorrelationIndex.create_date
CrossCorrelationIndex.disk_size
CrossCorrelationIndex.fill_from_has_traits()
CrossCorrelationIndex.fk_datatype_group
CrossCorrelationIndex.fk_from_operation
CrossCorrelationIndex.fk_parent_burst
CrossCorrelationIndex.fk_source_gid
CrossCorrelationIndex.get_extra_info()
CrossCorrelationIndex.gid
CrossCorrelationIndex.has_valid_time_series
CrossCorrelationIndex.has_volume_mapping
CrossCorrelationIndex.id
CrossCorrelationIndex.invalid
CrossCorrelationIndex.is_nan
CrossCorrelationIndex.labels_ordering
CrossCorrelationIndex.module
CrossCorrelationIndex.ndim
CrossCorrelationIndex.parent_operation
CrossCorrelationIndex.shape
CrossCorrelationIndex.source
CrossCorrelationIndex.state
CrossCorrelationIndex.subject
CrossCorrelationIndex.subtype
CrossCorrelationIndex.title
CrossCorrelationIndex.type
CrossCorrelationIndex.type_
CrossCorrelationIndex.user_tag_1
CrossCorrelationIndex.user_tag_2
CrossCorrelationIndex.user_tag_3
CrossCorrelationIndex.user_tag_4
CrossCorrelationIndex.user_tag_5
CrossCorrelationIndex.visible
time_series
TimeSeriesEEGIndex
TimeSeriesEEGIndex.create_date
TimeSeriesEEGIndex.data_length_1d
TimeSeriesEEGIndex.data_length_2d
TimeSeriesEEGIndex.data_length_3d
TimeSeriesEEGIndex.data_length_4d
TimeSeriesEEGIndex.data_ndim
TimeSeriesEEGIndex.disk_size
TimeSeriesEEGIndex.fill_from_h5()
TimeSeriesEEGIndex.fill_from_has_traits()
TimeSeriesEEGIndex.fk_datatype_group
TimeSeriesEEGIndex.fk_from_operation
TimeSeriesEEGIndex.fk_parent_burst
TimeSeriesEEGIndex.fk_sensors_gid
TimeSeriesEEGIndex.gid
TimeSeriesEEGIndex.has_surface_mapping
TimeSeriesEEGIndex.has_volume_mapping
TimeSeriesEEGIndex.id
TimeSeriesEEGIndex.invalid
TimeSeriesEEGIndex.is_nan
TimeSeriesEEGIndex.labels_dimensions
TimeSeriesEEGIndex.labels_ordering
TimeSeriesEEGIndex.module
TimeSeriesEEGIndex.parent_operation
TimeSeriesEEGIndex.sample_period
TimeSeriesEEGIndex.sample_period_unit
TimeSeriesEEGIndex.sample_rate
TimeSeriesEEGIndex.sensors
TimeSeriesEEGIndex.start_time
TimeSeriesEEGIndex.state
TimeSeriesEEGIndex.subject
TimeSeriesEEGIndex.time_series_type
TimeSeriesEEGIndex.title
TimeSeriesEEGIndex.type
TimeSeriesEEGIndex.type_
TimeSeriesEEGIndex.user_tag_1
TimeSeriesEEGIndex.user_tag_2
TimeSeriesEEGIndex.user_tag_3
TimeSeriesEEGIndex.user_tag_4
TimeSeriesEEGIndex.user_tag_5
TimeSeriesEEGIndex.visible
TimeSeriesIndex
TimeSeriesIndex.accepted_filters()
TimeSeriesIndex.create_date
TimeSeriesIndex.data_length_1d
TimeSeriesIndex.data_length_2d
TimeSeriesIndex.data_length_3d
TimeSeriesIndex.data_length_4d
TimeSeriesIndex.data_ndim
TimeSeriesIndex.disk_size
TimeSeriesIndex.fill_from_h5()
TimeSeriesIndex.fill_from_has_traits()
TimeSeriesIndex.fill_shape()
TimeSeriesIndex.fk_datatype_group
TimeSeriesIndex.fk_from_operation
TimeSeriesIndex.fk_parent_burst
TimeSeriesIndex.get_data_shape()
TimeSeriesIndex.get_extra_info()
TimeSeriesIndex.get_labels_for_dimension()
TimeSeriesIndex.gid
TimeSeriesIndex.has_surface_mapping
TimeSeriesIndex.has_volume_mapping
TimeSeriesIndex.id
TimeSeriesIndex.invalid
TimeSeriesIndex.is_nan
TimeSeriesIndex.labels_dimensions
TimeSeriesIndex.labels_ordering
TimeSeriesIndex.module
TimeSeriesIndex.parent_operation
TimeSeriesIndex.sample_period
TimeSeriesIndex.sample_period_unit
TimeSeriesIndex.sample_rate
TimeSeriesIndex.start_time
TimeSeriesIndex.state
TimeSeriesIndex.subject
TimeSeriesIndex.time_series_type
TimeSeriesIndex.title
TimeSeriesIndex.type
TimeSeriesIndex.type_
TimeSeriesIndex.user_tag_1
TimeSeriesIndex.user_tag_2
TimeSeriesIndex.user_tag_3
TimeSeriesIndex.user_tag_4
TimeSeriesIndex.user_tag_5
TimeSeriesIndex.visible
TimeSeriesMEGIndex
TimeSeriesMEGIndex.create_date
TimeSeriesMEGIndex.data_length_1d
TimeSeriesMEGIndex.data_length_2d
TimeSeriesMEGIndex.data_length_3d
TimeSeriesMEGIndex.data_length_4d
TimeSeriesMEGIndex.data_ndim
TimeSeriesMEGIndex.disk_size
TimeSeriesMEGIndex.fill_from_h5()
TimeSeriesMEGIndex.fill_from_has_traits()
TimeSeriesMEGIndex.fk_datatype_group
TimeSeriesMEGIndex.fk_from_operation
TimeSeriesMEGIndex.fk_parent_burst
TimeSeriesMEGIndex.fk_sensors_gid
TimeSeriesMEGIndex.gid
TimeSeriesMEGIndex.has_surface_mapping
TimeSeriesMEGIndex.has_volume_mapping
TimeSeriesMEGIndex.id
TimeSeriesMEGIndex.invalid
TimeSeriesMEGIndex.is_nan
TimeSeriesMEGIndex.labels_dimensions
TimeSeriesMEGIndex.labels_ordering
TimeSeriesMEGIndex.module
TimeSeriesMEGIndex.parent_operation
TimeSeriesMEGIndex.sample_period
TimeSeriesMEGIndex.sample_period_unit
TimeSeriesMEGIndex.sample_rate
TimeSeriesMEGIndex.sensors
TimeSeriesMEGIndex.start_time
TimeSeriesMEGIndex.state
TimeSeriesMEGIndex.subject
TimeSeriesMEGIndex.time_series_type
TimeSeriesMEGIndex.title
TimeSeriesMEGIndex.type
TimeSeriesMEGIndex.type_
TimeSeriesMEGIndex.user_tag_1
TimeSeriesMEGIndex.user_tag_2
TimeSeriesMEGIndex.user_tag_3
TimeSeriesMEGIndex.user_tag_4
TimeSeriesMEGIndex.user_tag_5
TimeSeriesMEGIndex.visible
TimeSeriesRegionIndex
TimeSeriesRegionIndex.connectivity
TimeSeriesRegionIndex.create_date
TimeSeriesRegionIndex.data_length_1d
TimeSeriesRegionIndex.data_length_2d
TimeSeriesRegionIndex.data_length_3d
TimeSeriesRegionIndex.data_length_4d
TimeSeriesRegionIndex.data_ndim
TimeSeriesRegionIndex.disk_size
TimeSeriesRegionIndex.fill_from_h5()
TimeSeriesRegionIndex.fill_from_has_traits()
TimeSeriesRegionIndex.fk_connectivity_gid
TimeSeriesRegionIndex.fk_datatype_group
TimeSeriesRegionIndex.fk_from_operation
TimeSeriesRegionIndex.fk_parent_burst
TimeSeriesRegionIndex.fk_region_mapping_gid
TimeSeriesRegionIndex.fk_region_mapping_volume_gid
TimeSeriesRegionIndex.gid
TimeSeriesRegionIndex.has_surface_mapping
TimeSeriesRegionIndex.has_volume_mapping
TimeSeriesRegionIndex.id
TimeSeriesRegionIndex.invalid
TimeSeriesRegionIndex.is_nan
TimeSeriesRegionIndex.labels_dimensions
TimeSeriesRegionIndex.labels_ordering
TimeSeriesRegionIndex.module
TimeSeriesRegionIndex.parent_operation
TimeSeriesRegionIndex.region_mapping
TimeSeriesRegionIndex.region_mapping_volume
TimeSeriesRegionIndex.sample_period
TimeSeriesRegionIndex.sample_period_unit
TimeSeriesRegionIndex.sample_rate
TimeSeriesRegionIndex.start_time
TimeSeriesRegionIndex.state
TimeSeriesRegionIndex.subject
TimeSeriesRegionIndex.time_series_type
TimeSeriesRegionIndex.title
TimeSeriesRegionIndex.type
TimeSeriesRegionIndex.type_
TimeSeriesRegionIndex.user_tag_1
TimeSeriesRegionIndex.user_tag_2
TimeSeriesRegionIndex.user_tag_3
TimeSeriesRegionIndex.user_tag_4
TimeSeriesRegionIndex.user_tag_5
TimeSeriesRegionIndex.visible
TimeSeriesSEEGIndex
TimeSeriesSEEGIndex.create_date
TimeSeriesSEEGIndex.data_length_1d
TimeSeriesSEEGIndex.data_length_2d
TimeSeriesSEEGIndex.data_length_3d
TimeSeriesSEEGIndex.data_length_4d
TimeSeriesSEEGIndex.data_ndim
TimeSeriesSEEGIndex.disk_size
TimeSeriesSEEGIndex.fill_from_h5()
TimeSeriesSEEGIndex.fill_from_has_traits()
TimeSeriesSEEGIndex.fk_datatype_group
TimeSeriesSEEGIndex.fk_from_operation
TimeSeriesSEEGIndex.fk_parent_burst
TimeSeriesSEEGIndex.fk_sensors_gid
TimeSeriesSEEGIndex.gid
TimeSeriesSEEGIndex.has_surface_mapping
TimeSeriesSEEGIndex.has_volume_mapping
TimeSeriesSEEGIndex.id
TimeSeriesSEEGIndex.invalid
TimeSeriesSEEGIndex.is_nan
TimeSeriesSEEGIndex.labels_dimensions
TimeSeriesSEEGIndex.labels_ordering
TimeSeriesSEEGIndex.module
TimeSeriesSEEGIndex.parent_operation
TimeSeriesSEEGIndex.sample_period
TimeSeriesSEEGIndex.sample_period_unit
TimeSeriesSEEGIndex.sample_rate
TimeSeriesSEEGIndex.sensors
TimeSeriesSEEGIndex.start_time
TimeSeriesSEEGIndex.state
TimeSeriesSEEGIndex.subject
TimeSeriesSEEGIndex.time_series_type
TimeSeriesSEEGIndex.title
TimeSeriesSEEGIndex.type
TimeSeriesSEEGIndex.type_
TimeSeriesSEEGIndex.user_tag_1
TimeSeriesSEEGIndex.user_tag_2
TimeSeriesSEEGIndex.user_tag_3
TimeSeriesSEEGIndex.user_tag_4
TimeSeriesSEEGIndex.user_tag_5
TimeSeriesSEEGIndex.visible
TimeSeriesSurfaceIndex
TimeSeriesSurfaceIndex.create_date
TimeSeriesSurfaceIndex.data_length_1d
TimeSeriesSurfaceIndex.data_length_2d
TimeSeriesSurfaceIndex.data_length_3d
TimeSeriesSurfaceIndex.data_length_4d
TimeSeriesSurfaceIndex.data_ndim
TimeSeriesSurfaceIndex.disk_size
TimeSeriesSurfaceIndex.fill_from_h5()
TimeSeriesSurfaceIndex.fill_from_has_traits()
TimeSeriesSurfaceIndex.fk_datatype_group
TimeSeriesSurfaceIndex.fk_from_operation
TimeSeriesSurfaceIndex.fk_parent_burst
TimeSeriesSurfaceIndex.fk_surface_gid
TimeSeriesSurfaceIndex.gid
TimeSeriesSurfaceIndex.has_surface_mapping
TimeSeriesSurfaceIndex.has_volume_mapping
TimeSeriesSurfaceIndex.id
TimeSeriesSurfaceIndex.invalid
TimeSeriesSurfaceIndex.is_nan
TimeSeriesSurfaceIndex.labels_dimensions
TimeSeriesSurfaceIndex.labels_ordering
TimeSeriesSurfaceIndex.module
TimeSeriesSurfaceIndex.parent_operation
TimeSeriesSurfaceIndex.sample_period
TimeSeriesSurfaceIndex.sample_period_unit
TimeSeriesSurfaceIndex.sample_rate
TimeSeriesSurfaceIndex.start_time
TimeSeriesSurfaceIndex.state
TimeSeriesSurfaceIndex.subject
TimeSeriesSurfaceIndex.surface
TimeSeriesSurfaceIndex.time_series_type
TimeSeriesSurfaceIndex.title
TimeSeriesSurfaceIndex.type
TimeSeriesSurfaceIndex.type_
TimeSeriesSurfaceIndex.user_tag_1
TimeSeriesSurfaceIndex.user_tag_2
TimeSeriesSurfaceIndex.user_tag_3
TimeSeriesSurfaceIndex.user_tag_4
TimeSeriesSurfaceIndex.user_tag_5
TimeSeriesSurfaceIndex.visible
TimeSeriesVolumeIndex
TimeSeriesVolumeIndex.create_date
TimeSeriesVolumeIndex.data_length_1d
TimeSeriesVolumeIndex.data_length_2d
TimeSeriesVolumeIndex.data_length_3d
TimeSeriesVolumeIndex.data_length_4d
TimeSeriesVolumeIndex.data_ndim
TimeSeriesVolumeIndex.disk_size
TimeSeriesVolumeIndex.fill_from_h5()
TimeSeriesVolumeIndex.fill_from_has_traits()
TimeSeriesVolumeIndex.fk_datatype_group
TimeSeriesVolumeIndex.fk_from_operation
TimeSeriesVolumeIndex.fk_parent_burst
TimeSeriesVolumeIndex.fk_volume_gid
TimeSeriesVolumeIndex.gid
TimeSeriesVolumeIndex.has_surface_mapping
TimeSeriesVolumeIndex.has_volume_mapping
TimeSeriesVolumeIndex.id
TimeSeriesVolumeIndex.invalid
TimeSeriesVolumeIndex.is_nan
TimeSeriesVolumeIndex.labels_dimensions
TimeSeriesVolumeIndex.labels_ordering
TimeSeriesVolumeIndex.module
TimeSeriesVolumeIndex.parent_operation
TimeSeriesVolumeIndex.sample_period
TimeSeriesVolumeIndex.sample_period_unit
TimeSeriesVolumeIndex.sample_rate
TimeSeriesVolumeIndex.start_time
TimeSeriesVolumeIndex.state
TimeSeriesVolumeIndex.subject
TimeSeriesVolumeIndex.time_series_type
TimeSeriesVolumeIndex.title
TimeSeriesVolumeIndex.type
TimeSeriesVolumeIndex.type_
TimeSeriesVolumeIndex.user_tag_1
TimeSeriesVolumeIndex.user_tag_2
TimeSeriesVolumeIndex.user_tag_3
TimeSeriesVolumeIndex.user_tag_4
TimeSeriesVolumeIndex.user_tag_5
TimeSeriesVolumeIndex.visible
TimeSeriesVolumeIndex.volume
tracts
TractsIndex
TractsIndex.create_date
TractsIndex.disk_size
TractsIndex.fill_from_has_traits()
TractsIndex.fk_datatype_group
TractsIndex.fk_from_operation
TractsIndex.fk_parent_burst
TractsIndex.fk_region_volume_map_gid
TractsIndex.gid
TractsIndex.id
TractsIndex.invalid
TractsIndex.is_nan
TractsIndex.module
TractsIndex.parent_operation
TractsIndex.region_volume_map
TractsIndex.state
TractsIndex.subject
TractsIndex.title
TractsIndex.type
TractsIndex.type_
TractsIndex.user_tag_1
TractsIndex.user_tag_2
TractsIndex.user_tag_3
TractsIndex.user_tag_4
TractsIndex.user_tag_5
TractsIndex.visible
volume
VolumeIndex
VolumeIndex.create_date
VolumeIndex.disk_size
VolumeIndex.fill_from_has_traits()
VolumeIndex.fk_datatype_group
VolumeIndex.fk_from_operation
VolumeIndex.fk_parent_burst
VolumeIndex.gid
VolumeIndex.id
VolumeIndex.invalid
VolumeIndex.is_nan
VolumeIndex.module
VolumeIndex.origin
VolumeIndex.parent_operation
VolumeIndex.parsed_origin
VolumeIndex.parsed_voxel_size
VolumeIndex.state
VolumeIndex.subject
VolumeIndex.title
VolumeIndex.type
VolumeIndex.type_
VolumeIndex.user_tag_1
VolumeIndex.user_tag_2
VolumeIndex.user_tag_3
VolumeIndex.user_tag_4
VolumeIndex.user_tag_5
VolumeIndex.visible
VolumeIndex.voxel_size
VolumeIndex.voxel_unit
h5
Packageannotation_h5
connectivity_h5
fcd_h5
graph_h5
local_connectivity_h5
mapped_value_h5
mode_decompositions_h5
patterns_h5
projections_h5
region_mapping_h5
sensors_h5
spectral_h5
structural_h5
surface_h5
SurfaceH5
SurfaceH5.center()
SurfaceH5.get_lines_slice()
SurfaceH5.get_number_of_split_slices()
SurfaceH5.get_pick_triangles_slice()
SurfaceH5.get_pick_vertex_normals_slice()
SurfaceH5.get_pick_vertices_slice()
SurfaceH5.get_slice_vertex_boundaries()
SurfaceH5.get_slices_to_hemisphere_mask()
SurfaceH5.get_triangles_slice()
SurfaceH5.get_vertex_normals_slice()
SurfaceH5.get_vertices_slice()
SurfaceH5.prepare_slices()
SurfaceH5.read_subtype_attr()
SurfaceH5.store()
temporal_correlations_h5
time_series_h5
TimeSeriesEEGH5
TimeSeriesH5
TimeSeriesH5.get_default_selection()
TimeSeriesH5.get_grouped_space_labels()
TimeSeriesH5.get_measure_points_selection_gid()
TimeSeriesH5.get_min_max_values()
TimeSeriesH5.get_space_labels()
TimeSeriesH5.read_channels_page()
TimeSeriesH5.read_data_page()
TimeSeriesH5.read_data_shape()
TimeSeriesH5.read_data_slice()
TimeSeriesH5.read_time_page()
TimeSeriesH5.store_references()
TimeSeriesH5.write_data_slice()
TimeSeriesH5.write_data_slice_on_grow_dimension()
TimeSeriesH5.write_time_slice()
TimeSeriesMEGH5
TimeSeriesRegionH5
TimeSeriesSEEGH5
TimeSeriesSensorsH5
TimeSeriesSurfaceH5
TimeSeriesVolumeH5
tracts_h5
volumes_h5
- Subpackages
exporters
Packageforms
Packagecoupling_forms
equation_forms
AbsoluteEquationForm
AlphaEquationForm
BoldMonitorEquationsEnum
CosineEquationForm
DoubleExponentialEquationForm
DoubleGaussianEquationForm
EquationForm
FirstOrderVolterraEquationForm
GammaEquationForm
GaussianEquationForm
GeneralizedSigmoidEquationForm
IdentityEquationForm
LinearEquationForm
LogarithmEquationForm
MixtureOfGammasEquationForm
PulseTrainEquationForm
RescaleIntervalEquationForm
SigmoidEquationForm
SinusoidEquationForm
SpatialEquationsEnum
SurfaceModelEquationsEnum
TemporalEquationsEnum
TransferVectorEquationsEnum
get_equation_to_form_dict()
get_form_for_equation()
get_ui_name_to_monitor_equation_dict()
equation_plot_forms
form_with_ranges
FormWithRanges
FormWithRanges.CORTEX_FRAGMENT_KEY
FormWithRanges.COUPLING_FRAGMENT_KEY
FormWithRanges.MODEL_FRAGMENT_KEY
FormWithRanges.NOISE_FRAGMENT_KEY
FormWithRanges.ensure_correct_prefix_for_param_name()
FormWithRanges.get_params_configurable_in_phase_plane()
FormWithRanges.get_range_param_prefixes_dict()
FormWithRanges.get_range_parameters()
integrator_forms
model_forms
CoombesByrne2DModelForm
CoombesByrneModelForm
DumontGutkinModelForm
Epileptor2DModelForm
EpileptorCodim3ModelForm
EpileptorCodim3SlowModModelForm
EpileptorModelForm
EpileptorRestingStateModelForm
GastSchmidtKnoscheSDModelForm
GastSchmidtKnoscheSFModelForm
Generic2dOscillatorModelForm
HopfieldModelForm
JansenRitModelForm
KuramotoModelForm
LarterBreakspearModelForm
LinearModelForm
ModelForm
ModelsEnum
ModelsEnum.COOMBES_BYRNE
ModelsEnum.COOMBES_BYRNE_2D
ModelsEnum.DUMONT_GUTKIN
ModelsEnum.EPILEPTOR
ModelsEnum.EPILEPTOR_2D
ModelsEnum.EPILEPTOR_CODIM_3
ModelsEnum.EPILEPTOR_CODIM_3_SLOW
ModelsEnum.EPILEPTOR_RS
ModelsEnum.GAST_SCHMIDT_KNOSCHE_SD
ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF
ModelsEnum.GENERIC_2D_OSCILLATOR
ModelsEnum.HOPFIELD
ModelsEnum.JANSEN_RIT
ModelsEnum.KURAMOTO
ModelsEnum.LARTER_BREAKSPEAR
ModelsEnum.LINEAR
ModelsEnum.MONTBRIO_PAZO_ROXIN
ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO
ModelsEnum.REDUCED_SET_HINDMARSH_ROSE
ModelsEnum.REDUCED_WONG_WANG
ModelsEnum.REDUCED_WONG_WANG_EXC_INH
ModelsEnum.SUP_HOPF
ModelsEnum.WILSON_COWAN
ModelsEnum.ZERLAUT_FIRST_ORDER
ModelsEnum.ZERLAUT_SECOND_ORDER
ModelsEnum.ZETTERBERG_JANSEN
MontbrioPazoRoxinModelForm
ReducedSetFitzHughNagumoModelForm
ReducedSetHindmarshRoseModelForm
ReducedWongWangExcInhModelForm
ReducedWongWangModelForm
StateVariableRangesForm
SupHopfModelForm
WilsonCowanModelForm
ZerlautAdaptationFirstOrderModelForm
ZerlautAdaptationSecondOrderModelForm
ZetterbergJansenModelForm
get_form_for_model()
get_model_to_form_dict()
monitor_forms
noise_forms
simulator_fragments
surface_model_parameters_form
SurfaceModelEquationsEnum
SurfaceModelParametersForm
SurfaceModelParametersForm.NAME_EQATION_PARAMS_DIV
SurfaceModelParametersForm.default_equation
SurfaceModelParametersForm.equation_field_label
SurfaceModelParametersForm.fill_from_trait()
SurfaceModelParametersForm.get_filters()
SurfaceModelParametersForm.get_input_name()
SurfaceModelParametersForm.get_required_datatype()
transfer_vector_form
simulator
Packagehpc_simulator_adapter
range_parameters
simulator_adapter
SimulatorAdapter
SimulatorAdapter.algorithm
SimulatorAdapter.branch_simulation_state_gid
SimulatorAdapter.configure()
SimulatorAdapter.get_adapter_fragments()
SimulatorAdapter.get_execution_time_approximation()
SimulatorAdapter.get_form_class()
SimulatorAdapter.get_output()
SimulatorAdapter.get_required_disk_size()
SimulatorAdapter.get_required_memory_size()
SimulatorAdapter.launch()
SimulatorAdapterForm
uploaders
Packagebids_importer
BIDSImporter
BIDSImporter.COORDS_ROWS_KEY
BIDSImporter.COORDS_TOKEN
BIDSImporter.DISTANCES_FILE
BIDSImporter.JSON_EXTENSION
BIDSImporter.NET_TOKEN
BIDSImporter.NORMALS_FILE
BIDSImporter.SPATIAL_TOKEN
BIDSImporter.SUBJECT_PREFIX
BIDSImporter.TRIANGLES_FILE
BIDSImporter.TSV_EXTENSION
BIDSImporter.TS_TOKEN
BIDSImporter.VERTICES_FILE
BIDSImporter.WEIGHTS_FILE
BIDSImporter.WEIGHTS_JSON_FILE
BIDSImporter.get_form_class()
BIDSImporter.get_output()
BIDSImporter.launch()
BIDSImporterForm
BIDSImporterModel
brco_importer
connectivity_measure_importer
csv_connectivity_importer
gifti_surface_importer
gifti_timeseries_importer
mat_timeseries_eeg_importer
mat_timeseries_importer
RegionMatTimeSeriesImporterForm
RegionMatTimeSeriesImporterModel
RegionMatTimeSeriesImporterModel.data_file
RegionMatTimeSeriesImporterModel.dataset_name
RegionMatTimeSeriesImporterModel.datatype
RegionMatTimeSeriesImporterModel.sampling_rate
RegionMatTimeSeriesImporterModel.slice
RegionMatTimeSeriesImporterModel.start_time
RegionMatTimeSeriesImporterModel.structure_path
RegionMatTimeSeriesImporterModel.transpose
RegionTimeSeriesImporter
networkx_importer
nifti_importer
obj_importer
projection_matrix_importer
region_mapping_importer
sensors_importer
tract_importer
tumor_dataset_importer
TumorDatasetImporter
TumorDatasetImporter.CONN_ZIP_FILE
TumorDatasetImporter.FC_DATASET_NAME
TumorDatasetImporter.FC_MAT_FILE
TumorDatasetImporter.MAXIMUM_DOWNLOAD_RETRIES
TumorDatasetImporter.SLEEP_TIME
TumorDatasetImporter.TIME_SERIES_CSV_FILE
TumorDatasetImporter.get_form_class()
TumorDatasetImporter.get_output()
TumorDatasetImporter.get_required_disk_size()
TumorDatasetImporter.get_required_memory_size()
TumorDatasetImporter.launch()
TumorDatasetImporterForm
TumorDatasetImporterModel
tvb_importer
zip_connectivity_importer
ZIPConnectivityImporter
ZIPConnectivityImporter.AREA_TOKEN
ZIPConnectivityImporter.CENTRES_TOKEN
ZIPConnectivityImporter.CENTRES_TOKEN2
ZIPConnectivityImporter.CORTICAL_INFO
ZIPConnectivityImporter.HEMISPHERE_INFO
ZIPConnectivityImporter.ORIENTATION_TOKEN
ZIPConnectivityImporter.TRACT_TOKEN
ZIPConnectivityImporter.WEIGHT_TOKEN
ZIPConnectivityImporter.get_form_class()
ZIPConnectivityImporter.get_output()
ZIPConnectivityImporter.launch()
ZIPConnectivityImporterForm
ZIPConnectivityImporterModel
zip_surface_importer
- Subpackages
brco
Packageparser
XMLParser
XMLParser.ATTR_ONTOLOGY_DEFINITION
XMLParser.ATTR_ONTOLOGY_LABEL
XMLParser.ATTR_ONTOLOGY_RELATION
XMLParser.ATTR_ONTOLOGY_SYN
XMLParser.ATTR_ONTOLOGY_URI
XMLParser.ATTR_TVB_ID
XMLParser.ATTR_TVB_LABEL
XMLParser.LOGGER
XMLParser.PREFIX_LEFT
XMLParser.PREFIX_RIGHT
XMLParser.PREFIX_TVB_ID
XMLParser.read_annotation_terms()
gifti
Packagemat
Packagenetworkx_connectivity
Packageparser
NetworkxParser
NetworkxParser.HEMISPHERE_RIGHT
NetworkxParser.KEY_EDGE_TRACT
NetworkxParser.KEY_EDGE_WEIGHT
NetworkxParser.KEY_NODE_COORDINATES
NetworkxParser.KEY_NODE_HEMISPHERE
NetworkxParser.KEY_NODE_LABEL
NetworkxParser.KEY_NODE_REGION
NetworkxParser.OPERATORS
NetworkxParser.REGION_CORTICAL
NetworkxParser.parse()
nifti
Packageobj
Packagezip_surface
Package
visualizers
Packageannotations_viewer
brain
complex_imaginary_coherence
connectivity
Connectivity2DViewer
Connectivity2DViewer.DEFAULT_COLOR
Connectivity2DViewer.MAX_RAY
Connectivity2DViewer.MAX_WEIGHT_VALUE
Connectivity2DViewer.MIN_RAY
Connectivity2DViewer.MIN_WEIGHT_VALUE
Connectivity2DViewer.OTHER_COLOR
Connectivity2DViewer.compute_parameters()
Connectivity2DViewer.compute_preview_parameters()
Connectivity2DViewer.point2json()
Connectivity3DViewer
ConnectivityViewer
ConnectivityViewerForm
ConnectivityViewerModel
connectivity_edge_bundle
cross_coherence
cross_correlation
eeg_monitor
fourier_spectrum
histogram
ica
local_connectivity_view
matrix_viewer
pca
pearson_cross_correlation
pearson_edge_bundle
phase_plane_interactive
pse
pse_discrete
pse_isocline
region_volume_mapping
BaseVolumeVisualizerForm
BaseVolumeVisualizerModel
ConnectivityMeasureVolumeVisualizer
ConnectivityMeasureVolumeVisualizerForm
ConnectivityMeasureVolumeVisualizerModel
MappedArrayVolumeVisualizer
MriVolumeVisualizer
MriVolumeVisualizerForm
RegionVolumeMappingVisualiser
RegionVolumeMappingVisualiserForm
RegionVolumeMappingVisualiserModel
VolumeVisualizerForm
VolumeVisualizerModel
sensors
surface_view
time_series
time_series_volume
topographic
tract
wavelet_spectrogram
- Subpackages
config
Packagealgorithm_categories
profile_settings
- Subpackages
init
Packagedatatypes_registry
initializer
introspector_registry
IntrospectionRegistry
IntrospectionRegistry.ADAPTERS
IntrospectionRegistry.ALLEN_CREATOR_CLASS
IntrospectionRegistry.ALLEN_CREATOR_MODULE
IntrospectionRegistry.CONNECTIVITY_CLASS
IntrospectionRegistry.CONNECTIVITY_MODULE
IntrospectionRegistry.DATATYPES
IntrospectionRegistry.DISCRETE_PSE_ADAPTER_CLASS
IntrospectionRegistry.DISCRETE_PSE_ADAPTER_MODULE
IntrospectionRegistry.ISOCLINE_PSE_ADAPTER_CLASS
IntrospectionRegistry.ISOCLINE_PSE_ADAPTER_MODULE
IntrospectionRegistry.MEASURE_METRICS_CLASS
IntrospectionRegistry.MEASURE_METRICS_MODULE
IntrospectionRegistry.SIIBRA_CREATOR_CLASS
IntrospectionRegistry.SIIBRA_CREATOR_MODULE
IntrospectionRegistry.SIMULATOR_CLASS
IntrospectionRegistry.SIMULATOR_MODULE
import_adapters()
import_dt_index()
model_manager
logger
Package
core
Packagedecorators
operation_async_launcher
operation_hpc_launcher
removers_factory
utils
- Subpackages
adapters
Packageabcadapter
ABCAdapter
ABCAdapter.add_operation_additional_info()
ABCAdapter.array_size2kb()
ABCAdapter.build_adapter()
ABCAdapter.build_adapter_from_class()
ABCAdapter.can_be_active()
ABCAdapter.configure()
ABCAdapter.determine_adapter_class()
ABCAdapter.extract_operation_data()
ABCAdapter.fill_index_from_h5()
ABCAdapter.get_adapter_fragments()
ABCAdapter.get_execution_time_approximation()
ABCAdapter.get_form()
ABCAdapter.get_form_class()
ABCAdapter.get_group_description()
ABCAdapter.get_group_name()
ABCAdapter.get_output()
ABCAdapter.get_required_disk_size()
ABCAdapter.get_required_memory_size()
ABCAdapter.get_storage_path()
ABCAdapter.get_ui_description()
ABCAdapter.get_ui_name()
ABCAdapter.get_ui_subsection()
ABCAdapter.get_view_model_class()
ABCAdapter.launch()
ABCAdapter.launch_mode
ABCAdapter.load_entity_by_gid()
ABCAdapter.load_traited_by_gid()
ABCAdapter.load_view_model()
ABCAdapter.load_with_references()
ABCAdapter.path_for()
ABCAdapter.store_complete()
ABCAdapter.stored_adapter
ABCAdapter.submit_form()
ABCAdapter.view_model_to_has_traits()
ABCAdapterForm
AdapterLaunchModeEnum
nan_allowed()
nan_not_allowed()
abcdisplayer
ABCDisplayer
ABCDisplayer.KEY_CONTENT
ABCDisplayer.KEY_IS_ADAPTER
ABCDisplayer.VISUALIZERS_ROOT
ABCDisplayer.build_display_result()
ABCDisplayer.dump_with_precision()
ABCDisplayer.get_one_dimensional_list()
ABCDisplayer.get_output()
ABCDisplayer.get_required_disk_size()
ABCDisplayer.handle_infinite_values()
ABCDisplayer.launch_mode
ABCDisplayer.prepare_shell_surface_params()
URLGenerator
abcremover
abcuploader
arguments_serialisation
constants
exceptions
inputs_processor
code_versions
Packageentities
Packageexportable
generic_attributes
GenericAttributes
GenericAttributes.create_date
GenericAttributes.fill_from()
GenericAttributes.invalid
GenericAttributes.is_nan
GenericAttributes.operation_tag
GenericAttributes.parent_burst
GenericAttributes.state
GenericAttributes.subject
GenericAttributes.user_tag_1
GenericAttributes.user_tag_2
GenericAttributes.user_tag_3
GenericAttributes.user_tag_4
GenericAttributes.user_tag_5
GenericAttributes.visible
load
- Subpackages
file
Packagefiles_update_manager
FilesUpdateManager
FilesUpdateManager.DATA_TYPES_PAGE_SIZE
FilesUpdateManager.MESSAGE
FilesUpdateManager.PROJECTS_PAGE_SIZE
FilesUpdateManager.STATUS
FilesUpdateManager.UPDATE_SCRIPTS_SUFFIX
FilesUpdateManager.get_all_h5_paths()
FilesUpdateManager.get_file_data_version()
FilesUpdateManager.is_file_up_to_date()
FilesUpdateManager.run_all_updates()
FilesUpdateManager.upgrade_file()
- Subpackages
file_update_scripts
Packagesimulator
Packageburst_configuration_h5
datatype_measure_h5
simulation_history_h5
SimulationHistory
SimulationHistory.current_state
SimulationHistory.current_step
SimulationHistory.fill_into()
SimulationHistory.history
SimulationHistory.integrator_noise_rng_state_algo
SimulationHistory.integrator_noise_rng_state_cached_gauss
SimulationHistory.integrator_noise_rng_state_has_gauss
SimulationHistory.integrator_noise_rng_state_keys
SimulationHistory.integrator_noise_rng_state_pos
SimulationHistory.monitor_names
SimulationHistory.monitor_stock_1
SimulationHistory.monitor_stock_10
SimulationHistory.monitor_stock_11
SimulationHistory.monitor_stock_12
SimulationHistory.monitor_stock_13
SimulationHistory.monitor_stock_14
SimulationHistory.monitor_stock_15
SimulationHistory.monitor_stock_2
SimulationHistory.monitor_stock_3
SimulationHistory.monitor_stock_4
SimulationHistory.monitor_stock_5
SimulationHistory.monitor_stock_6
SimulationHistory.monitor_stock_7
SimulationHistory.monitor_stock_8
SimulationHistory.monitor_stock_9
SimulationHistory.populate_from()
SimulationHistoryH5
view_model
AdditiveNoiseViewModel
BoldRegionROIViewModel
BoldViewModel
CortexViewModel
Dop853StochasticViewModel
Dop853ViewModel
Dopri5StochasticViewModel
Dopri5ViewModel
EEGViewModel
EulerDeterministicViewModel
EulerStochasticViewModel
GlobalAverageViewModel
HeunDeterministicViewModel
HeunStochasticViewModel
IdentityViewModel
IntegratorStochasticViewModel
IntegratorViewModel
IntegratorViewModelsEnum
IntegratorViewModelsEnum.DIFFERENCE_EQUATION
IntegratorViewModelsEnum.DOPRI_5
IntegratorViewModelsEnum.DOPRI_5_STOCHASTIC
IntegratorViewModelsEnum.DOP_853
IntegratorViewModelsEnum.DOP_853_STOCHASTIC
IntegratorViewModelsEnum.EULER
IntegratorViewModelsEnum.EULER_MARUYAMA
IntegratorViewModelsEnum.HEUN
IntegratorViewModelsEnum.RUNGE_KUTTA
IntegratorViewModelsEnum.STOCHASTIC_HEUN
IntegratorViewModelsEnum.STOCHASTIC_VARIABLE_ODER_ADAMS
IntegratorViewModelsEnum.VARIABLE_ORDER_ADAMS
MEGViewModel
MonitorViewModel
MultiplicativeNoiseViewModel
NoiseViewModel
ProjectionViewModel
RawViewModel
RungeKutta4thOrderDeterministicViewModel
SimulatorAdapterModel
SimulatorAdapterModel.connectivity
SimulatorAdapterModel.determine_indexes_for_chosen_vars_of_interest()
SimulatorAdapterModel.first_monitor
SimulatorAdapterModel.get_variables_of_interest_indexes()
SimulatorAdapterModel.history_gid
SimulatorAdapterModel.integrator
SimulatorAdapterModel.linked_has_traits
SimulatorAdapterModel.monitors
SimulatorAdapterModel.stimulus
SimulatorAdapterModel.surface
SpatialAverageViewModel
SubSampleViewModel
TemporalAverageViewModel
VODEStochasticViewModel
VODEViewModel
iEEGViewModel
filters
Packagechain
FilterChain
FilterChain.add_condition()
FilterChain.algorithm
FilterChain.algorithm_category
FilterChain.algorithm_category_replacement
FilterChain.algorithm_replacement
FilterChain.datatype
FilterChain.datatype_replacement
FilterChain.from_json()
FilterChain.get_filters_for_type()
FilterChain.get_python_filter_equivalent()
FilterChain.get_sql_filter_equivalent()
FilterChain.operation
FilterChain.operation_replacement
FilterChain.to_json()
UIFilter
exceptions
factory
model
Packagemodel_burst
BurstConfiguration
BurstConfiguration.BURST_CANCELED
BurstConfiguration.BURST_ERROR
BurstConfiguration.BURST_FINISHED
BurstConfiguration.BURST_RUNNING
BurstConfiguration.clone()
BurstConfiguration.create_date
BurstConfiguration.datatypes_number
BurstConfiguration.dynamic_ids
BurstConfiguration.error_message
BurstConfiguration.finish_time
BurstConfiguration.fk_metric_operation_group
BurstConfiguration.fk_operation_group
BurstConfiguration.fk_project
BurstConfiguration.fk_simulation
BurstConfiguration.gid
BurstConfiguration.id
BurstConfiguration.is_finished
BurstConfiguration.is_group
BurstConfiguration.is_pse_burst()
BurstConfiguration.metric_operation_group
BurstConfiguration.name
BurstConfiguration.operation_group
BurstConfiguration.operation_info_for_burst_removal
BurstConfiguration.parent_burst_object
BurstConfiguration.process_time
BurstConfiguration.project
BurstConfiguration.range1
BurstConfiguration.range2
BurstConfiguration.ranges
BurstConfiguration.selected_tab
BurstConfiguration.simulator_gid
BurstConfiguration.start_time
BurstConfiguration.status
BurstConfiguration.title
BurstConfiguration.type_
Dynamic
model_datatype
DataType
DataType.accepted_filters()
DataType.after_store()
DataType.create_date
DataType.disk_size
DataType.display_name
DataType.display_type
DataType.fill_from_generic_attributes()
DataType.fill_from_h5()
DataType.fill_from_has_traits()
DataType.fixed_generic_attributes
DataType.fk_datatype_group
DataType.fk_from_operation
DataType.fk_parent_burst
DataType.get_extra_info()
DataType.gid
DataType.id
DataType.invalid
DataType.is_nan
DataType.is_ts
DataType.module
DataType.parent_operation
DataType.state
DataType.subject
DataType.summary_info
DataType.title
DataType.type
DataType.type_
DataType.user_tag_1
DataType.user_tag_2
DataType.user_tag_3
DataType.user_tag_4
DataType.user_tag_5
DataType.visible
DataTypeGroup
DataTypeGroup.count_results
DataTypeGroup.create_date
DataTypeGroup.disk_size
DataTypeGroup.fk_datatype_group
DataTypeGroup.fk_from_operation
DataTypeGroup.fk_operation_group
DataTypeGroup.fk_parent_burst
DataTypeGroup.gid
DataTypeGroup.id
DataTypeGroup.invalid
DataTypeGroup.is_data_a_group()
DataTypeGroup.is_nan
DataTypeGroup.module
DataTypeGroup.no_of_ranges
DataTypeGroup.parent_operation
DataTypeGroup.parent_operation_group
DataTypeGroup.state
DataTypeGroup.subject
DataTypeGroup.title
DataTypeGroup.type
DataTypeGroup.type_
DataTypeGroup.user_tag_1
DataTypeGroup.user_tag_2
DataTypeGroup.user_tag_3
DataTypeGroup.user_tag_4
DataTypeGroup.user_tag_5
DataTypeGroup.visible
DataTypeMatrix
DataTypeMatrix.array_data_max
DataTypeMatrix.array_data_mean
DataTypeMatrix.array_data_min
DataTypeMatrix.array_has_complex
DataTypeMatrix.array_is_finite
DataTypeMatrix.create_date
DataTypeMatrix.disk_size
DataTypeMatrix.fill_from_has_traits()
DataTypeMatrix.fk_datatype_group
DataTypeMatrix.fk_from_operation
DataTypeMatrix.fk_parent_burst
DataTypeMatrix.gid
DataTypeMatrix.has_valid_time_series
DataTypeMatrix.has_volume_mapping
DataTypeMatrix.id
DataTypeMatrix.invalid
DataTypeMatrix.is_nan
DataTypeMatrix.module
DataTypeMatrix.ndim
DataTypeMatrix.parent_operation
DataTypeMatrix.parsed_shape
DataTypeMatrix.shape
DataTypeMatrix.state
DataTypeMatrix.subject
DataTypeMatrix.subtype
DataTypeMatrix.title
DataTypeMatrix.type
DataTypeMatrix.type_
DataTypeMatrix.user_tag_1
DataTypeMatrix.user_tag_2
DataTypeMatrix.user_tag_3
DataTypeMatrix.user_tag_4
DataTypeMatrix.user_tag_5
DataTypeMatrix.visible
Links
MeasurePointsSelection
StoredPSEFilter
model_operation
Algorithm
Algorithm.algorithm_category
Algorithm.classname
Algorithm.datatype_filter
Algorithm.description
Algorithm.displayname
Algorithm.fk_category
Algorithm.group_description
Algorithm.group_name
Algorithm.id
Algorithm.last_introspection_check
Algorithm.module
Algorithm.outputlist
Algorithm.parameter_name
Algorithm.removed
Algorithm.required_datatype
Algorithm.subsection_name
AlgorithmCategory
AlgorithmTransientGroup
Operation
Operation.additional_info
Operation.algorithm
Operation.completion_date
Operation.create_date
Operation.estimated_disk_size
Operation.fk_from_algo
Operation.fk_launched_by
Operation.fk_launched_in
Operation.fk_operation_group
Operation.from_dict()
Operation.gid
Operation.has_finished
Operation.id
Operation.mark_complete()
Operation.operation_group
Operation.project
Operation.queue_full
Operation.range_values
Operation.start_date
Operation.start_now()
Operation.status
Operation.to_dict()
Operation.user
Operation.user_group
Operation.view_model_disk_size
Operation.view_model_gid
Operation.visible
OperationGroup
OperationProcessIdentifier
ResultFigure
has_finished()
model_project
Project
Project.administrator
Project.description
Project.disable_imports
Project.fk_admin
Project.from_dict()
Project.gid
Project.id
Project.last_updated
Project.max_operation_size
Project.members
Project.name
Project.operations_canceled
Project.operations_error
Project.operations_finished
Project.operations_pending
Project.operations_started
Project.refresh_update_date()
Project.to_dict()
Project.version
User
User.display_name
User.email
User.get_preference()
User.get_project_structure_grouping()
User.get_viewers_color_scheme()
User.gid
User.id
User.is_administrator()
User.is_online_help_active()
User.password
User.preferences
User.role
User.selected_project
User.set_preference()
User.set_project_structure_grouping()
User.set_viewers_color_scheme()
User.switch_online_help_state()
User.username
User.validated
UserPreferences
User_to_Project
storage
PackageDAO
burst_dao
datatype_dao
DatatypeDAO
DatatypeDAO.compute_bursts_disk_size()
DatatypeDAO.count_all_datatypes()
DatatypeDAO.count_datatypes()
DatatypeDAO.count_datatypes_in_burst()
DatatypeDAO.count_datatypes_in_group()
DatatypeDAO.get_all_datatypes()
DatatypeDAO.get_data_in_project()
DatatypeDAO.get_datatype_by_gid()
DatatypeDAO.get_datatype_details()
DatatypeDAO.get_datatype_extra_info()
DatatypeDAO.get_datatype_group_by_gid()
DatatypeDAO.get_datatype_group_disk_size()
DatatypeDAO.get_datatype_in_group()
DatatypeDAO.get_datatype_measure_group_from_ts_from_pse()
DatatypeDAO.get_datatypegroup_by_op_group_id()
DatatypeDAO.get_datatypegroup_for_project()
DatatypeDAO.get_datatypes_for_range()
DatatypeDAO.get_datatypes_from_datatype_group()
DatatypeDAO.get_datatypes_in_project()
DatatypeDAO.get_disk_size_for_operation()
DatatypeDAO.get_last_data_with_uid()
DatatypeDAO.get_linked_datatypes_in_project()
DatatypeDAO.get_links_for_datatype()
DatatypeDAO.get_number_of_bursts()
DatatypeDAO.get_selections_for_project()
DatatypeDAO.get_stored_pse_filters()
DatatypeDAO.get_summary_for_group()
DatatypeDAO.get_values_of_datatype()
DatatypeDAO.is_datatype_group()
DatatypeDAO.session
DatatypeDAO.set_datatype_visibility()
DatatypeDAO.try_load_last_entity_of_type()
exceptions
operation_dao
OperationDAO
OperationDAO.compute_disk_size_for_started_ops()
OperationDAO.count_resulted_datatypes()
OperationDAO.filter_category()
OperationDAO.get_adapters_from_categories()
OperationDAO.get_algorithm_by_id()
OperationDAO.get_algorithm_by_module()
OperationDAO.get_algorithm_categories()
OperationDAO.get_all_algorithms()
OperationDAO.get_all_operations_for_uploaders()
OperationDAO.get_applicable_adapters()
OperationDAO.get_category_by_id()
OperationDAO.get_figure_count()
OperationDAO.get_filtered_operations()
OperationDAO.get_launchable_categories()
OperationDAO.get_operation_by_gid()
OperationDAO.get_operation_by_id()
OperationDAO.get_operation_lazy_by_gid()
OperationDAO.get_operation_numbers()
OperationDAO.get_operation_process_for_operation()
OperationDAO.get_operationgroup_by_gid()
OperationDAO.get_operationgroup_by_id()
OperationDAO.get_operations()
OperationDAO.get_operations_for_hpc_job()
OperationDAO.get_operations_in_group()
OperationDAO.get_operations_with_error_in_project()
OperationDAO.get_previews()
OperationDAO.get_raw_categories()
OperationDAO.get_results_for_operation()
OperationDAO.get_uploader_categories()
OperationDAO.get_visualisers_categories()
OperationDAO.is_upload_operation()
OperationDAO.load_figure()
OperationDAO.session
OperationDAO.set_operation_and_group_visibility()
OperationDAO.try_get_operation_by_id()
project_dao
CaseDAO
CaseDAO.add_members_to_project()
CaseDAO.compute_user_generated_disk_size()
CaseDAO.count_projects_for_name()
CaseDAO.count_users_for_name()
CaseDAO.delete_members_for_project()
CaseDAO.delete_project()
CaseDAO.get_administrators()
CaseDAO.get_all_projects()
CaseDAO.get_all_users()
CaseDAO.get_link()
CaseDAO.get_linkable_projects_for_user()
CaseDAO.get_links_to_project()
CaseDAO.get_members_of_project()
CaseDAO.get_project_by_gid()
CaseDAO.get_project_by_id()
CaseDAO.get_project_by_name()
CaseDAO.get_project_disk_size()
CaseDAO.get_project_for_operation()
CaseDAO.get_project_lazy_by_gid()
CaseDAO.get_projects_for_user()
CaseDAO.get_system_user()
CaseDAO.get_user_by_email()
CaseDAO.get_user_by_gid()
CaseDAO.get_user_by_id()
CaseDAO.get_user_by_name()
CaseDAO.get_user_for_datatype()
CaseDAO.session
root_dao
session_maker
workflow_dao
transient
Packagecontext_overlay
CommonDetails
DataTypeOverlayDetails
DataTypeOverlayDetails.DATA_STATE
DataTypeOverlayDetails.DATA_SUBJECT
DataTypeOverlayDetails.DATA_TAG_1
DataTypeOverlayDetails.DATA_TAG_2
DataTypeOverlayDetails.DATA_TAG_3
DataTypeOverlayDetails.DATA_TAG_4
DataTypeOverlayDetails.DATA_TAG_5
DataTypeOverlayDetails.DATA_TITLE
DataTypeOverlayDetails.fill_from_datatype()
OperationOverlayDetails
range_parameter
structure_entities
DataTypeMetaData
DataTypeMetaData.DEFAULT_SUBJECT
DataTypeMetaData.KEY_AUTHOR
DataTypeMetaData.KEY_BURST
DataTypeMetaData.KEY_CLASS_NAME
DataTypeMetaData.KEY_COUNT
DataTypeMetaData.KEY_CREATE_DATA_DAY
DataTypeMetaData.KEY_CREATE_DATA_MONTH
DataTypeMetaData.KEY_DATATYPE_ID
DataTypeMetaData.KEY_DATE
DataTypeMetaData.KEY_FK_OPERATION_GROUP
DataTypeMetaData.KEY_GID
DataTypeMetaData.KEY_INVALID
DataTypeMetaData.KEY_LINK
DataTypeMetaData.KEY_MODULE
DataTypeMetaData.KEY_NODE_TYPE
DataTypeMetaData.KEY_OPERATION_ALGORITHM
DataTypeMetaData.KEY_OPERATION_GROUP_NAME
DataTypeMetaData.KEY_OPERATION_TAG
DataTypeMetaData.KEY_OPERATION_TYPE
DataTypeMetaData.KEY_OP_GROUP_ID
DataTypeMetaData.KEY_RELEVANCY
DataTypeMetaData.KEY_STATE
DataTypeMetaData.KEY_SUBJECT
DataTypeMetaData.KEY_TAG_1
DataTypeMetaData.KEY_TAG_2
DataTypeMetaData.KEY_TAG_3
DataTypeMetaData.KEY_TAG_4
DataTypeMetaData.KEY_TAG_5
DataTypeMetaData.KEY_TITLE
DataTypeMetaData.STATES
DataTypeMetaData.create_date
DataTypeMetaData.get_filterable_meta()
DataTypeMetaData.gid
DataTypeMetaData.group
DataTypeMetaData.mark_invalid()
DataTypeMetaData.merge_data()
DataTypeMetaData.subject
StructureNode
StructureNode.PREFIX_ID_LEAF
StructureNode.PREFIX_ID_NODE
StructureNode.PREFIX_ID_PROJECT
StructureNode.SEP
StructureNode.TYPE_FILE
StructureNode.TYPE_FOLDER
StructureNode.TYPE_INVALID
StructureNode.has_children
StructureNode.is_group
StructureNode.is_irelevant
StructureNode.is_link
StructureNode.metadata2tree()
StructureNode.type
neocom
Package_h5loader
_registry
h5
determine_filepath()
gather_all_references_by_index()
gather_references_of_view_model()
h5_file_for_gid()
h5_file_for_index()
index_for_h5_file()
load()
load_from_dir()
load_from_gid()
load_from_index()
load_ht()
load_view_model()
load_view_model_from_file()
load_with_links()
load_with_links_from_dir()
load_with_references()
load_with_references_from_dir()
path_by_dir()
path_for()
path_for_stored_index()
store()
store_complete()
store_complete_to_dir()
store_ht()
store_to_dir()
store_view_model()
neotraits
Package_h5accessors
_h5core
H5File
H5File.KEY_WRITTEN_BY
H5File.close()
H5File.determine_datatype_from_file()
H5File.determine_type()
H5File.file_name_base()
H5File.from_file()
H5File.gather_references()
H5File.get_class_path()
H5File.get_metadata_param()
H5File.h5_class_from_file()
H5File.is_new_file
H5File.iter_accessors()
H5File.iter_datasets()
H5File.load_generic_attributes()
H5File.load_into()
H5File.read_subtype_attr()
H5File.store()
H5File.store_generic_attributes()
H5File.store_metadata_param()
ViewModelH5
db
forms
h5
spatial_model
uploader_view_model
view_model
project_versions
Packageservices
Packagealgorithm_service
AlgorithmService
AlgorithmService.create_link()
AlgorithmService.fill_adapter_form()
AlgorithmService.fill_selectfield_with_datatypes()
AlgorithmService.get_algorithm_by_identifier()
AlgorithmService.get_algorithm_by_module_and_class()
AlgorithmService.get_analyze_groups()
AlgorithmService.get_category_by_id()
AlgorithmService.get_generic_entity()
AlgorithmService.get_launchable_algorithms()
AlgorithmService.get_launchable_algorithms_for_datatype()
AlgorithmService.get_operation_numbers()
AlgorithmService.get_raw_categories()
AlgorithmService.get_selections_for_project()
AlgorithmService.get_stored_pse_filters()
AlgorithmService.get_upload_algorithms()
AlgorithmService.get_visualisers_category()
AlgorithmService.get_visualizers_for_group()
AlgorithmService.prepare_adapter()
AlgorithmService.prepare_adapter_form()
AlgorithmService.remove_link()
AlgorithmService.save_measure_points_selection()
AlgorithmService.save_pse_filter()
authorization
backend_client_factory
burst_config_serialization
burst_service
BurstService
BurstService.LAUNCH_BRANCH
BurstService.LAUNCH_NEW
BurstService.get_available_bursts()
BurstService.get_burst_for_operation_id()
BurstService.get_range_param_by_name()
BurstService.handle_range_params_at_loading()
BurstService.load_burst_configuration()
BurstService.load_burst_configuration_from_folder()
BurstService.load_simulation_from_zip()
BurstService.mark_burst_finished()
BurstService.persist_operation_state()
BurstService.populate_burst_disk_usage()
BurstService.prepare_burst_for_pse()
BurstService.prepare_data_for_burst_copy()
BurstService.prepare_index_for_metric_result()
BurstService.prepare_indexes_for_simulation_results()
BurstService.prepare_metrics_operation()
BurstService.prepare_simulation_name()
BurstService.remove_burst_configuration()
BurstService.rename_burst()
BurstService.store_burst()
BurstService.store_burst_configuration()
BurstService.update_burst_status()
BurstService.update_history_status()
BurstService.update_simulation_fields()
email_sender
exceptions
figure_service
hpc_operation_service
import_service
ImportService
ImportService.build_operation_from_file()
ImportService.check_import_references()
ImportService.create_view_model()
ImportService.import_list_of_operations()
ImportService.import_operation()
ImportService.import_project_structure()
ImportService.import_simulator_configuration_zip()
ImportService.load_datatype_from_file()
ImportService.store_datatype()
ImportService.store_or_link_datatype()
Operation2ImportData
operation_service
OperationService
OperationService.ATT_UID
OperationService.fire_operation()
OperationService.fits_max_operation_size()
OperationService.group_operation_launch()
OperationService.initiate_operation()
OperationService.initiate_prelaunch()
OperationService.launch_operation()
OperationService.load_operation()
OperationService.prepare_metadata()
OperationService.prepare_operation()
OperationService.stop_operation()
OperationService.store_view_model()
project_service
ProjectService
ProjectService.count_filtered_operations()
ProjectService.find_project()
ProjectService.find_project_lazy_by_gid()
ProjectService.get_all_datatypes_from_data()
ProjectService.get_all_operations_for_uploaders()
ProjectService.get_datatype_by_id()
ProjectService.get_datatype_details()
ProjectService.get_datatype_in_group()
ProjectService.get_datatypegroup_by_gid()
ProjectService.get_datatypegroup_by_op_group_id()
ProjectService.get_datatypes_from_datatype_group()
ProjectService.get_datatypes_in_project()
ProjectService.get_filterable_meta()
ProjectService.get_linkable_projects_for_user()
ProjectService.get_linked_datatypes_storage_path()
ProjectService.get_operation_details()
ProjectService.get_operation_group_by_gid()
ProjectService.get_operation_group_by_id()
ProjectService.get_operations_in_group()
ProjectService.get_project_structure()
ProjectService.get_results_for_operation()
ProjectService.is_datatype_group()
ProjectService.is_upload_operation()
ProjectService.load_operation_by_gid()
ProjectService.load_operation_lazy_by_gid()
ProjectService.remove_datatype()
ProjectService.remove_member_from_project()
ProjectService.remove_operation()
ProjectService.remove_project()
ProjectService.retrieve_all_user_projects()
ProjectService.retrieve_project_full()
ProjectService.retrieve_projects_for_user()
ProjectService.set_datatype_visibility()
ProjectService.set_operation_and_group_visibility()
ProjectService.store_project()
ProjectService.update_metadata()
initialize_storage()
settings_service
SettingsService
SettingsService.KEYS_DISPLAY_ORDER
SettingsService.KEY_ADMIN_DISPLAY_NAME
SettingsService.KEY_ADMIN_EMAIL
SettingsService.KEY_ADMIN_NAME
SettingsService.KEY_ADMIN_PWD
SettingsService.KEY_CLUSTER
SettingsService.KEY_CLUSTER_SCHEDULER
SettingsService.KEY_DB_URL
SettingsService.KEY_ENABLE_KC_LOGIN
SettingsService.KEY_KC_CONFIG
SettingsService.KEY_KC_WEB_CONFIG
SettingsService.KEY_MAX_DISK_SPACE_USR
SettingsService.KEY_MAX_NR_SURFACE_VERTEX
SettingsService.KEY_MAX_NR_THREADS
SettingsService.KEY_MAX_RANGE
SettingsService.KEY_PORT
SettingsService.KEY_SELECTED_DB
SettingsService.KEY_STORAGE
SettingsService.check_db_url()
SettingsService.get_disk_free_space()
SettingsService.save_settings()
simulator_service
SimulatorService
SimulatorService.async_launch_and_prepare_pse()
SimulatorService.async_launch_and_prepare_simulation()
SimulatorService.async_launch_simulation_on_server()
SimulatorService.compute_conn_branch_conditions()
SimulatorService.get_simulation_state_index()
SimulatorService.prepare_simulation_on_server()
SimulatorService.reset_at_connectivity_change()
SimulatorService.reset_at_surface_change()
SimulatorService.validate_first_fragment()
texture_to_json
user_service
UserService
UserService.USER_ROLES
UserService.check_login()
UserService.compute_user_generated_disk_size()
UserService.create_user()
UserService.delete_user()
UserService.edit_user()
UserService.get_administrators()
UserService.get_external_db_user()
UserService.get_user_by_gid()
UserService.get_user_by_id()
UserService.get_user_by_name()
UserService.get_users_for_project()
UserService.is_username_valid()
UserService.reset_password()
UserService.retrieve_users_except()
UserService.save_project_to_user()
UserService.validate_user()
- Subpackages
backend_clients
Packagebackend_client
cluster_scheduler_client
hpc_scheduler_client
HPCJobStatus
HPCOperationThread
HPCSchedulerClient
HPCSchedulerClient.CONTAINER_INPUT_FOLDER
HPCSchedulerClient.CSCS_DATA_FOLDER
HPCSchedulerClient.CSCS_LOGIN_TOKEN_ENV_KEY
HPCSchedulerClient.CSCS_PROJECT
HPCSchedulerClient.HOME_FOLDER_MOUNT
HPCSchedulerClient.OUTPUT_FOLDER
HPCSchedulerClient.TVB_BIN_ENV_KEY
HPCSchedulerClient.compute_available_disk_space()
HPCSchedulerClient.execute()
HPCSchedulerClient.stage_out_to_operation_folder()
HPCSchedulerClient.stop_operation()
HPCSchedulerClient.storage_interface
HPCSchedulerClient.update_datatype_groups()
HPCSchedulerClient.update_db_with_results()
get_op_thread()
standalone_client
interfaces
Package- Subpackages
command
Packagerest
Package- Subpackages
bids_monitor
Packagebids_data_builder
BIDSDataBuilder
BIDSDataBuilder.create_archive()
BIDSDataBuilder.create_dataset_json_files()
BIDSDataBuilder.create_dataset_subjects()
BIDSDataBuilder.files_build_data_check()
BIDSDataBuilder.get_abs_path()
BIDSDataBuilder.get_complete_paths()
BIDSDataBuilder.get_connected_dependencies_paths()
BIDSDataBuilder.get_data_files()
BIDSDataBuilder.init_paths()
BIDSDataBuilder.subject_build_data_check()
bids_dir_monitor
launch_bids_monitor
- Subpackages
tests
Packagebids_monitor_test
TestBIDSDataBuilder
TestBIDSDataBuilder.TS_JSON_TO_COPY
TestBIDSDataBuilder.TS_TO_COPY
TestBIDSDataBuilder.extract_data()
TestBIDSDataBuilder.extract_file_names()
TestBIDSDataBuilder.get_storage_path()
TestBIDSDataBuilder.pytestmark
TestBIDSDataBuilder.setup()
TestBIDSDataBuilder.teardown_method()
TestBIDSDataBuilder.test_create_bids_dataset()
TestBIDSDataBuilder.test_monitor_bids_dataset()
client
Packageclient_decorators
main_api
tvb_client
TVBClient
TVBClient.add_members_to_project()
TVBClient.browser_login()
TVBClient.create_project()
TVBClient.fire_simulation()
TVBClient.get_data_in_project()
TVBClient.get_extra_info()
TVBClient.get_operation_results()
TVBClient.get_operation_status()
TVBClient.get_operations_for_datatype()
TVBClient.get_operations_in_project()
TVBClient.get_project_list()
TVBClient.get_users()
TVBClient.launch_operation()
TVBClient.load_datatype_from_file()
TVBClient.load_datatype_with_full_references()
TVBClient.load_datatype_with_links()
TVBClient.logout()
TVBClient.open_browser()
TVBClient.quick_launch_operation()
TVBClient.retrieve_datatype()
TVBClient.update_auth_token()
- Subpackages
commons
Packagedecoders
dtos
exceptions
files_helper
status_codes
strings
FormKeyInput
LinkPlaceholder
RequestFileKey
RestLink
RestLink.DATATYPE_EXTRA_INFO
RestLink.DATATYPE_OPERATIONS
RestLink.DATA_IN_PROJECT
RestLink.FIRE_SIMULATION
RestLink.GET_DATATYPE
RestLink.IS_DATA_ENCRYPTED
RestLink.LAUNCH_OPERATION
RestLink.LOGIN
RestLink.OPERATIONS_IN_PROJECT
RestLink.OPERATION_RESULTS
RestLink.OPERATION_STATUS
RestLink.PROJECTS
RestLink.PROJECT_MEMBERS
RestLink.USEFUL_URLS
RestLink.compute_url()
RestNamespace
Strings
server
Package
- Subpackages
web
Packageoperation_openshift_assigner
request_handler
run
run_landing_page
structure
WebStructure
WebStructure.ANALYZERS_ONLINE_HELP_SHORTCUTS
WebStructure.SECTION_ANALYZE
WebStructure.SECTION_BURST
WebStructure.SECTION_CONNECTIVITY
WebStructure.SECTION_PROJECT
WebStructure.SECTION_STIMULUS
WebStructure.SECTION_USER
WebStructure.SUB_SECTION_ACCOUNT
WebStructure.SUB_SECTION_ALLEN
WebStructure.SUB_SECTION_ANALYZE_1
WebStructure.SUB_SECTION_ANALYZE_10
WebStructure.SUB_SECTION_ANALYZE_11
WebStructure.SUB_SECTION_ANALYZE_12
WebStructure.SUB_SECTION_ANALYZE_13
WebStructure.SUB_SECTION_ANALYZE_14
WebStructure.SUB_SECTION_ANALYZE_15
WebStructure.SUB_SECTION_ANALYZE_16
WebStructure.SUB_SECTION_ANALYZE_17
WebStructure.SUB_SECTION_ANALYZE_18
WebStructure.SUB_SECTION_ANALYZE_2
WebStructure.SUB_SECTION_ANALYZE_3
WebStructure.SUB_SECTION_ANALYZE_4
WebStructure.SUB_SECTION_ANALYZE_5
WebStructure.SUB_SECTION_ANALYZE_6
WebStructure.SUB_SECTION_ANALYZE_7
WebStructure.SUB_SECTION_ANALYZE_8
WebStructure.SUB_SECTION_ANALYZE_9
WebStructure.SUB_SECTION_ANALYZE_MENU
WebStructure.SUB_SECTION_BURST
WebStructure.SUB_SECTION_CONNECTIVITY
WebStructure.SUB_SECTION_CONNECTIVITY_MENU
WebStructure.SUB_SECTION_DATA_STRUCTURE
WebStructure.SUB_SECTION_FIGURES
WebStructure.SUB_SECTION_LIST_PROJECTS
WebStructure.SUB_SECTION_LOCAL_CONNECTIVITY
WebStructure.SUB_SECTION_LOGIN
WebStructure.SUB_SECTION_MODEL_REGIONS
WebStructure.SUB_SECTION_MODEL_SURFACE
WebStructure.SUB_SECTION_NOISE_CONFIGURATION
WebStructure.SUB_SECTION_OPERATIONS
WebStructure.SUB_SECTION_PHASE_PLANE
WebStructure.SUB_SECTION_PROJECT_MENU
WebStructure.SUB_SECTION_PROPERTIES_PROJECT
WebStructure.SUB_SECTION_SIIBRA
WebStructure.SUB_SECTION_STIMULUS_MENU
WebStructure.SUB_SECTION_STIMULUS_REGION
WebStructure.SUB_SECTION_STIMULUS_SURFACE
WebStructure.SUB_SECTION_VIEW_0
WebStructure.SUB_SECTION_VIEW_1
WebStructure.SUB_SECTION_VIEW_10
WebStructure.SUB_SECTION_VIEW_11
WebStructure.SUB_SECTION_VIEW_12
WebStructure.SUB_SECTION_VIEW_13
WebStructure.SUB_SECTION_VIEW_14
WebStructure.SUB_SECTION_VIEW_15
WebStructure.SUB_SECTION_VIEW_16
WebStructure.SUB_SECTION_VIEW_17
WebStructure.SUB_SECTION_VIEW_18
WebStructure.SUB_SECTION_VIEW_19
WebStructure.SUB_SECTION_VIEW_2
WebStructure.SUB_SECTION_VIEW_20
WebStructure.SUB_SECTION_VIEW_21
WebStructure.SUB_SECTION_VIEW_22
WebStructure.SUB_SECTION_VIEW_23
WebStructure.SUB_SECTION_VIEW_24
WebStructure.SUB_SECTION_VIEW_25
WebStructure.SUB_SECTION_VIEW_3
WebStructure.SUB_SECTION_VIEW_4
WebStructure.SUB_SECTION_VIEW_5
WebStructure.SUB_SECTION_VIEW_6
WebStructure.SUB_SECTION_VIEW_7
WebStructure.SUB_SECTION_VIEW_8
WebStructure.SUB_SECTION_VIEW_9
WebStructure.VISUALIZERS_ONLINE_HELP_SHORTCUTS
WebStructure.WEB_SECTION_TITLES
WebStructure.WEB_SUBSECTION_TITLES
- Subpackages
controllers
Packageautologging
base_controller
BaseController
BaseController.MAX_SIZE_ERROR_MSG
BaseController.build_path()
BaseController.error()
BaseController.fill_default_attributes()
BaseController.fill_overlay_attributes()
BaseController.get_url_adapter()
BaseController.index()
BaseController.mark_file_for_delete()
BaseController.redirect()
BaseController.render_adapter_form()
BaseController.showBlockerOverlay()
BaseController.tvb()
BaseController.update_operations_count()
common
InvalidFormValues
MissingDataException
NotAllowed
NotAuthenticated
add2session()
expire_session()
get_current_project()
get_from_session()
get_logged_user()
get_message_from_session()
has_error_message()
pop_message_from_session()
remove_from_session()
remove_project_from_session()
set_error_message()
set_important_message()
set_info_message()
set_message()
set_warning_message()
decorators
flow_controller
FlowController
FlowController.NEW_SELECTION_NAME
FlowController.cancel_or_remove_operation()
FlowController.create_row_of_specs()
FlowController.default()
FlowController.execute_post()
FlowController.fill_default_attributes()
FlowController.get_adapter_template()
FlowController.get_available_selections()
FlowController.get_filtered_datatypes()
FlowController.get_pse_filters()
FlowController.get_simple_adapter_interface()
FlowController.get_template_for_adapter()
FlowController.getadapterinterface()
FlowController.invoke_adapter()
FlowController.prepare_group_launch()
FlowController.read_binary_datatype_attribute()
FlowController.read_datatype_attribute()
FlowController.read_from_h5_file()
FlowController.readserverstaticfile()
FlowController.refresh_subform()
FlowController.reload_burst_operation()
FlowController.reloadoperation()
FlowController.show_group_of_algorithms()
FlowController.step_analyzers()
FlowController.step_connectivity()
FlowController.store_exploration_section()
FlowController.store_measure_points_selection()
FlowController.store_pse_filter()
hpc_controller
kube_controller
settings_controller
users_controller
EditUserForm
KeycloakLoginForm
LoginForm
RecoveryForm
RegisterForm
UniqueUsername
UserController
UserController.base_url()
UserController.check_sso()
UserController.create_new()
UserController.fill_default_attributes()
UserController.get_color_schemes_json()
UserController.get_viewer_color_scheme()
UserController.index()
UserController.is_storage_ready()
UserController.keycloak_web_config()
UserController.logout()
UserController.profile()
UserController.recoverpassword()
UserController.register()
UserController.set_viewer_color_scheme()
UserController.switch_online_help()
UserController.usermanagement()
UserController.validate()
- Subpackages
burst
Packagebase_controller
dynamic_model_controller
Dynamic
DynamicModelController
DynamicModelController.KEY_CACHED_DYNAMIC_MODEL
DynamicModelController.LOGGER
DynamicModelController.dynamic_detail()
DynamicModelController.fill_default_attributes()
DynamicModelController.get_cached_dynamic()
DynamicModelController.graph_changed()
DynamicModelController.index()
DynamicModelController.integrator_parameters_changed()
DynamicModelController.model_changed()
DynamicModelController.parameters_changed()
DynamicModelController.refresh_subform()
DynamicModelController.submit()
DynamicModelController.trajectories()
SessionCache
exploration_controller
ParameterExplorationController
ParameterExplorationController.draw_discrete_exploration()
ParameterExplorationController.draw_isocline_exploration()
ParameterExplorationController.get_default_pse_viewer()
ParameterExplorationController.get_metric_matrix()
ParameterExplorationController.get_node_matrix()
ParameterExplorationController.get_series_array_discrete()
ParameterExplorationController.pse_error()
matjax
noise_configuration_controller
region_model_parameters_controller
transfer_vector_controller
TransferVectorController
TransferVectorController.apply_transfer_function()
TransferVectorController.base_url
TransferVectorController.clear_histogram()
TransferVectorController.fill_default_attributes()
TransferVectorController.get_equation_chart()
TransferVectorController.index()
TransferVectorController.no_connectivity_measure_page()
TransferVectorController.set_connectivity_measure()
TransferVectorController.set_model_parameter()
TransferVectorController.set_transfer_function_param()
TransferVectorController.submit_model_parameter()
TransferVectorController.title
help
Packageproject
Packagefigure_controller
project_controller
EditForm
ProjectController
ProjectController.KEY_OPERATION_FILTERS
ProjectController.NODE_OPERATION_GROUP_TYPE
ProjectController.NODE_OPERATION_TYPE
ProjectController.PRROJECTS_FOR_LINK_KEY
ProjectController.PRROJECTS_LINKED_KEY
ProjectController.createlink()
ProjectController.downloaddatatype()
ProjectController.downloadproject()
ProjectController.editone()
ProjectController.editstructure()
ProjectController.fill_default_attributes()
ProjectController.generate_call_out_control()
ProjectController.get_data_uploader_overlay()
ProjectController.get_datatype_details()
ProjectController.get_linkable_projects()
ProjectController.get_operation_details()
ProjectController.get_project_structure_grouping()
ProjectController.get_project_uploader_overlay()
ProjectController.getmemberspage()
ProjectController.index()
ProjectController.launchloader()
ProjectController.noderemove()
ProjectController.projectupload()
ProjectController.readjsonstructure()
ProjectController.removelink()
ProjectController.set_project_structure_grouping()
ProjectController.set_visibility()
ProjectController.show_confirmation_overlay()
ProjectController.updatemetadata()
ProjectController.viewall()
ProjectController.viewoperations()
simulator
Packagemonitors_wizard_handler
MonitorsWizardHandler
MonitorsWizardHandler.get_current_and_next_monitor_form()
MonitorsWizardHandler.get_fragment_after_monitors()
MonitorsWizardHandler.handle_next_fragment_for_monitors()
MonitorsWizardHandler.prepare_monitor_fragment()
MonitorsWizardHandler.prepare_monitor_legend()
MonitorsWizardHandler.prepare_next_fragment_after_noise()
MonitorsWizardHandler.set_monitors_list_on_simulator()
MonitorsWizardHandler.update_monitor()
simulator_controller
SimulatorController
SimulatorController.BRANCH_NAME_FORMAT
SimulatorController.COPY_NAME_FORMAT
SimulatorController.KEY_IS_LOAD_AFTER_REDIRECT
SimulatorController.KEY_KEEP_SAME_SIM_WIZARD
SimulatorController.branch_simulator_configuration()
SimulatorController.build_monitor_url()
SimulatorController.cancel_or_remove_burst()
SimulatorController.cancel_or_remove_operation()
SimulatorController.copy_simulator_configuration()
SimulatorController.export()
SimulatorController.get_first_monitor_fragment_url()
SimulatorController.get_history_status()
SimulatorController.get_last_fragment_url()
SimulatorController.get_upload_overlay()
SimulatorController.get_url_after_monitor_equation()
SimulatorController.get_url_after_monitors()
SimulatorController.get_url_for_final_fragment()
SimulatorController.get_urls_for_next_monitor_fragment()
SimulatorController.index()
SimulatorController.launch_pse()
SimulatorController.launch_simulation()
SimulatorController.load_burst_history()
SimulatorController.load_burst_read_only()
SimulatorController.load_simulator_configuration_from_zip()
SimulatorController.prepare_first_fragment()
SimulatorController.rename_burst()
SimulatorController.reset_simulator_configuration()
SimulatorController.set_connectivity()
SimulatorController.set_cortex()
SimulatorController.set_coupling_params()
SimulatorController.set_fragment_url()
SimulatorController.set_integrator()
SimulatorController.set_integrator_params()
SimulatorController.set_model()
SimulatorController.set_model_params()
SimulatorController.set_monitor_equation()
SimulatorController.set_monitor_params()
SimulatorController.set_monitors()
SimulatorController.set_noise_equation_params()
SimulatorController.set_noise_params()
SimulatorController.set_pse_params()
SimulatorController.set_stimulus()
SimulatorController.set_surface()
SimulatorController.setup_pse()
simulator_fragment_rendering_rules
SimulatorFragmentRenderingRules
SimulatorFragmentRenderingRules.FIRST_FORM_URL
SimulatorFragmentRenderingRules.disable_fields
SimulatorFragmentRenderingRules.hide_launch_and_setup_pse_button
SimulatorFragmentRenderingRules.hide_previous_button
SimulatorFragmentRenderingRules.include_branch_button
SimulatorFragmentRenderingRules.include_launch_button
SimulatorFragmentRenderingRules.include_launch_pse_button
SimulatorFragmentRenderingRules.include_next_button
SimulatorFragmentRenderingRules.include_previous_button
SimulatorFragmentRenderingRules.include_setup_noise
SimulatorFragmentRenderingRules.include_setup_pse
SimulatorFragmentRenderingRules.include_setup_region_model
SimulatorFragmentRenderingRules.include_setup_surface_model
SimulatorFragmentRenderingRules.load_readonly
SimulatorFragmentRenderingRules.to_dict()
simulator_wizzard_urls
SimulatorWizzardURLs
SimulatorWizzardURLs.LAUNCH_PSE_URL
SimulatorWizzardURLs.SETUP_PSE_URL
SimulatorWizzardURLs.SET_CONNECTIVITY_URL
SimulatorWizzardURLs.SET_CORTEX_URL
SimulatorWizzardURLs.SET_COUPLING_PARAMS_URL
SimulatorWizzardURLs.SET_INTEGRATOR_PARAMS_URL
SimulatorWizzardURLs.SET_INTEGRATOR_URL
SimulatorWizzardURLs.SET_MODEL_PARAMS_URL
SimulatorWizzardURLs.SET_MODEL_URL
SimulatorWizzardURLs.SET_MONITORS_URL
SimulatorWizzardURLs.SET_MONITOR_EQUATION_URL
SimulatorWizzardURLs.SET_MONITOR_PARAMS_URL
SimulatorWizzardURLs.SET_NOISE_EQUATION_PARAMS_URL
SimulatorWizzardURLs.SET_NOISE_PARAMS_URL
SimulatorWizzardURLs.SET_PSE_PARAMS_URL
SimulatorWizzardURLs.SET_STIMULUS_URL
SimulatorWizzardURLs.SET_SURFACE_URL
spatial
Packagebase_spatio_temporal_controller
SpatioTemporalController
SpatioTemporalController.MSG_MISSING_SURFACE
SpatioTemporalController.display_surface()
SpatioTemporalController.fill_default_attributes()
SpatioTemporalController.get_series_json()
SpatioTemporalController.get_ui_message()
SpatioTemporalController.get_x_axis_range()
SpatioTemporalController.index()
SpatioTemporalController.render_spatial_form()
local_connectivity_controller
LocalConnectivityController
LocalConnectivityController.CUTOFF_FIELD
LocalConnectivityController.DISPLAY_NAME_FIELD
LocalConnectivityController.EQUATION_FIELD
LocalConnectivityController.EQUATION_PARAMS_FIELD
LocalConnectivityController.SURFACE_FIELD
LocalConnectivityController.base_url
LocalConnectivityController.compute_data_for_gradient_view()
LocalConnectivityController.create_local_connectivity()
LocalConnectivityController.fill_default_attributes()
LocalConnectivityController.get_equation_chart()
LocalConnectivityController.get_series_json()
LocalConnectivityController.load_local_connectivity()
LocalConnectivityController.reset_local_connectivity()
LocalConnectivityController.set_cutoff_value()
LocalConnectivityController.set_display_name()
LocalConnectivityController.set_equation_param()
LocalConnectivityController.set_surface()
LocalConnectivityController.step_1()
LocalConnectivityController.step_2()
region_stimulus_controller
RegionStimulusController
RegionStimulusController.CONNECTIVITY_FIELD
RegionStimulusController.DISPLAY_NAME_FIELD
RegionStimulusController.MSG_MISSING_CONNECTIVITY
RegionStimulusController.TEMPORAL_FIELD
RegionStimulusController.TEMPORAL_PARAMS_FIELD
RegionStimulusController.base_url
RegionStimulusController.create_stimulus()
RegionStimulusController.display_connectivity()
RegionStimulusController.do_step()
RegionStimulusController.fill_default_attributes()
RegionStimulusController.get_equation_chart()
RegionStimulusController.load_region_stimulus()
RegionStimulusController.reset_region_stimulus()
RegionStimulusController.set_connectivity()
RegionStimulusController.set_display_name()
RegionStimulusController.set_temporal_param()
RegionStimulusController.step_1()
RegionStimulusController.step_1_submit()
RegionStimulusController.step_2()
RegionStimulusController.step_2_submit()
RegionStimulusController.update_scaling()
surface_model_parameters_controller
SurfaceModelParametersController
SurfaceModelParametersController.EQUATION_FIELD
SurfaceModelParametersController.EQUATION_PARAMS_FIELD
SurfaceModelParametersController.MODEL_PARAM_FIELD
SurfaceModelParametersController.apply_equation()
SurfaceModelParametersController.apply_focal_point()
SurfaceModelParametersController.base_url
SurfaceModelParametersController.edit_model_parameters()
SurfaceModelParametersController.fill_default_attributes()
SurfaceModelParametersController.get_data_from_burst_configuration()
SurfaceModelParametersController.get_equation_chart()
SurfaceModelParametersController.get_focal_points()
SurfaceModelParametersController.remove_focal_point()
SurfaceModelParametersController.set_equation_param()
SurfaceModelParametersController.set_model_parameter()
SurfaceModelParametersController.submit_model_parameters()
surface_stimulus_controller
SurfaceStimulusController
SurfaceStimulusController.DISPLAY_NAME_FIELD
SurfaceStimulusController.SPATIAL_FIELD
SurfaceStimulusController.SPATIAL_PARAMS_FIELD
SurfaceStimulusController.SURFACE_FIELD
SurfaceStimulusController.TEMPORAL_FIELD
SurfaceStimulusController.TEMPORAL_PARAMS_FIELD
SurfaceStimulusController.base_url
SurfaceStimulusController.create_stimulus()
SurfaceStimulusController.do_step()
SurfaceStimulusController.fill_default_attributes()
SurfaceStimulusController.get_spatial_equation_chart()
SurfaceStimulusController.get_stimulus_chunk()
SurfaceStimulusController.get_temporal_equation_chart()
SurfaceStimulusController.load_surface_stimulus()
SurfaceStimulusController.reload_default()
SurfaceStimulusController.set_display_name()
SurfaceStimulusController.set_spatial_param()
SurfaceStimulusController.set_surface()
SurfaceStimulusController.set_temporal_param()
SurfaceStimulusController.step_1()
SurfaceStimulusController.step_1_submit()
SurfaceStimulusController.step_2()
SurfaceStimulusController.step_2_submit()
SurfaceStimulusController.view_stimulus()
entities
Packagecontext_model_parameters
SurfaceContextModelParameters
SurfaceContextModelParameters.apply_equation()
SurfaceContextModelParameters.apply_focal_point()
SurfaceContextModelParameters.get_configure_info()
SurfaceContextModelParameters.get_data_for_model_param()
SurfaceContextModelParameters.get_equation_for_parameter()
SurfaceContextModelParameters.get_equation_information()
SurfaceContextModelParameters.get_focal_points_for_parameter()
SurfaceContextModelParameters.remove_focal_point()
SurfaceContextModelParameters.reset_equations_for_all_parameters()
SurfaceContextModelParameters.reset_param_equation()
context_overlay
context_selected_adapter
context_simulator
SimulatorContext
SimulatorContext.KEY_BURST_CONFIG
SimulatorContext.KEY_IS_SIMULATOR_BRANCH
SimulatorContext.KEY_IS_SIMULATOR_COPY
SimulatorContext.KEY_IS_SIMULATOR_LOAD
SimulatorContext.KEY_LAST_LOADED_FORM_URL
SimulatorContext.KEY_SIMULATOR_CONFIG
SimulatorContext.add_branch_and_copy_to_session()
SimulatorContext.add_last_loaded_form_url_to_session()
SimulatorContext.add_simulator_load_to_session()
SimulatorContext.burst_config
SimulatorContext.clean_project_data_from_session()
SimulatorContext.get_common_params()
SimulatorContext.init_session_at_burst_loading()
SimulatorContext.init_session_at_copy_preparation()
SimulatorContext.init_session_at_sim_config_from_zip()
SimulatorContext.init_session_at_sim_reset()
SimulatorContext.last_loaded_fragment_url
SimulatorContext.logged_user
SimulatorContext.project
SimulatorContext.remove_burst_config_from_session()
SimulatorContext.set_burst_config()
SimulatorContext.set_simulator()
SimulatorContext.set_warning_message()
SimulatorContext.simulator
context_transfer_vector
- Subpackages
storage
Packagestorage_interface
StorageInterface
StorageInterface.EXPORTED_SIMULATION_DTS_DIR
StorageInterface.EXPORTED_SIMULATION_NAME
StorageInterface.EXPORT_FOLDER
StorageInterface.EXPORT_FOLDER_NAME
StorageInterface.FILE_NAME_STRUCTURE
StorageInterface.IMAGES_FOLDER
StorageInterface.OPERATION_FOLDER_PREFIX
StorageInterface.PROJECTS_FOLDER
StorageInterface.ROOT_NODE_PATH
StorageInterface.TEMP_FOLDER
StorageInterface.TVB_PROJECT_FILE
StorageInterface.TVB_STORAGE_FILE_EXTENSION
StorageInterface.TVB_XML_FILE_EXTENSION
StorageInterface.TVB_ZIP_FILE_EXTENSION
StorageInterface.app_encryption_handler()
StorageInterface.check_and_delete()
StorageInterface.check_created()
StorageInterface.compute_recursive_h5_disk_usage()
StorageInterface.compute_size_on_disk()
StorageInterface.copy_file()
StorageInterface.dec_running_op_count()
StorageInterface.encryption_enabled()
StorageInterface.ends_with_tvb_file_extension()
StorageInterface.ends_with_tvb_storage_file_extension()
StorageInterface.export_datatype_from_rest_server()
StorageInterface.export_datatypes()
StorageInterface.export_datatypes_structure()
StorageInterface.export_project()
StorageInterface.export_simulator_configuration()
StorageInterface.get_allen_mouse_cache_folder()
StorageInterface.get_encryption_handler()
StorageInterface.get_filename()
StorageInterface.get_filenames_in_zip()
StorageInterface.get_images_folder()
StorageInterface.get_import_export_encryption_handler()
StorageInterface.get_project_folder()
StorageInterface.get_project_meta_file_path()
StorageInterface.get_projects_folder()
StorageInterface.get_storage_manager()
StorageInterface.get_temp_folder()
StorageInterface.import_datatype_to_rest_client()
StorageInterface.inc_project_usage_count()
StorageInterface.inc_running_op_count()
StorageInterface.is_in_usage()
StorageInterface.join()
StorageInterface.logger
StorageInterface.mark_stop()
StorageInterface.move_datatype_with_sync()
StorageInterface.open_tvb_zip()
StorageInterface.path_by_dir()
StorageInterface.path_for()
StorageInterface.prepare_encryption()
StorageInterface.push_folder_to_sync()
StorageInterface.read_metadata_from_xml()
StorageInterface.read_project_metadata()
StorageInterface.remove_figure()
StorageInterface.remove_files()
StorageInterface.remove_folder()
StorageInterface.remove_operation_data()
StorageInterface.remove_project()
StorageInterface.rename_project()
StorageInterface.run()
StorageInterface.set_project_active()
StorageInterface.set_project_inactive()
StorageInterface.start()
StorageInterface.startup_cleanup()
StorageInterface.sync_folders()
StorageInterface.unpack_zip()
StorageInterface.write_image_metadata()
StorageInterface.write_metadata_in_xml()
StorageInterface.write_project_metadata()
StorageInterface.write_project_metadata_from_dict()
StorageInterface.write_zip_folder()
- Subpackages
h5
Packagedecorators
utils
- Subpackages
encryption
Packagedata_encryption_handler
DataEncryptionHandler
DataEncryptionHandler.APP_ENCRYPTION_HANDLER
DataEncryptionHandler.CRYPTO_PASS
DataEncryptionHandler.ENCRYPTED_FOLDER_SUFFIX
DataEncryptionHandler.KEYS_FOLDER
DataEncryptionHandler.app_encryption_handler()
DataEncryptionHandler.check_and_delete()
DataEncryptionHandler.compute_encrypted_folder_path()
DataEncryptionHandler.dec_queue_count()
DataEncryptionHandler.dec_running_op_count()
DataEncryptionHandler.encryption_enabled()
DataEncryptionHandler.file_helper
DataEncryptionHandler.inc_project_usage_count()
DataEncryptionHandler.inc_running_op_count()
DataEncryptionHandler.is_in_usage()
DataEncryptionHandler.linked_projects
DataEncryptionHandler.lock
DataEncryptionHandler.marked_for_delete
DataEncryptionHandler.project_key_path()
DataEncryptionHandler.push_folder_to_sync()
DataEncryptionHandler.queue_elements_count
DataEncryptionHandler.running_operations
DataEncryptionHandler.set_project_active()
DataEncryptionHandler.set_project_inactive()
DataEncryptionHandler.startup_cleanup()
DataEncryptionHandler.sync_folders()
DataEncryptionHandler.sync_project_queue
DataEncryptionHandler.users_project_usage
DataEncryptionHandlerBuilder
DataEncryptionHandlerMeta
DataEncryptionRemoteHandler
DataEncryptionRemoteHandler.check_and_delete()
DataEncryptionRemoteHandler.dec_queue_count()
DataEncryptionRemoteHandler.dec_running_op_count()
DataEncryptionRemoteHandler.inc_project_usage_count()
DataEncryptionRemoteHandler.inc_running_op_count()
DataEncryptionRemoteHandler.is_in_usage()
DataEncryptionRemoteHandler.lock
DataEncryptionRemoteHandler.push_folder_to_sync()
DataEncryptionRemoteHandler.set_project_active()
DataEncryptionRemoteHandler.set_project_inactive()
DataEncryptionRemoteHandler.startup_cleanup()
DataEncryptionRemoteHandler.sync_folders()
FoldersQueueConsumer
InvalidStorageEncryptionException
encryption_handler
EncryptionHandler
EncryptionHandler.cleanup_encryption_handler()
EncryptionHandler.decrypt_files_to_dir()
EncryptionHandler.decrypt_results_to_dir()
EncryptionHandler.encrypt_inputs()
EncryptionHandler.encrypted_dir_name_regex
EncryptionHandler.encrypted_suffix
EncryptionHandler.generate_random_password()
EncryptionHandler.get_encrypted_dir()
EncryptionHandler.get_password_file()
import_export_encryption_handler
ImportExportEncryptionHandler
ImportExportEncryptionHandler.DECRYPTED_DATA_SUFFIX
ImportExportEncryptionHandler.ENCRYPTED_DATA_SUFFIX
ImportExportEncryptionHandler.ENCRYPTED_PASSWORD_NAME
ImportExportEncryptionHandler.PRIVATE_KEY_NAME
ImportExportEncryptionHandler.PUBLIC_KEY_NAME
ImportExportEncryptionHandler.add_encrypted_suffix()
ImportExportEncryptionHandler.decrypt_content()
ImportExportEncryptionHandler.encrypt_and_save_password()
ImportExportEncryptionHandler.encrypt_data_at_export()
ImportExportEncryptionHandler.encrypt_password()
ImportExportEncryptionHandler.extract_encrypted_password_from_list()
ImportExportEncryptionHandler.generate_public_private_key_pair()
ImportExportEncryptionHandler.get_path_to_encrypt()
ImportExportEncryptionHandler.load_public_key()
ImportExportEncryptionHandler.save_encrypted_password()
file
Packageexceptions
files_helper
FilesHelper
FilesHelper.ALLEN_MOUSE_CONNECTIVITY_CACHE_FOLDER
FilesHelper.PROJECTS_FOLDER
FilesHelper.check_created()
FilesHelper.compute_recursive_h5_disk_usage()
FilesHelper.compute_size_on_disk()
FilesHelper.copy_file()
FilesHelper.get_allen_mouse_cache_folder()
FilesHelper.get_images_folder()
FilesHelper.get_project_folder()
FilesHelper.get_project_folder_from_h5()
FilesHelper.get_project_meta_file_path()
FilesHelper.get_projects_folder()
FilesHelper.move_datatype()
FilesHelper.read_project_metadata()
FilesHelper.remove_figure()
FilesHelper.remove_files()
FilesHelper.remove_folder()
FilesHelper.remove_operation_data()
FilesHelper.rename_project_structure()
FilesHelper.write_image_metadata()
FilesHelper.write_project_metadata()
FilesHelper.write_project_metadata_from_dict()
TvbZip
hdf5_storage_manager
HDF5StorageManager
HDF5StorageManager.BOOL_VALUE_PREFIX
HDF5StorageManager.DATETIME_VALUE_PREFIX
HDF5StorageManager.DATE_TIME_FORMAT
HDF5StorageManager.H5pyStorageBuffer
HDF5StorageManager.LOCKS
HDF5StorageManager.ROOT_NODE_PATH
HDF5StorageManager.TVB_ATTRIBUTE_PREFIX
HDF5StorageManager.append_data()
HDF5StorageManager.close_file()
HDF5StorageManager.get_data()
HDF5StorageManager.get_data_shape()
HDF5StorageManager.get_file_data_version()
HDF5StorageManager.get_metadata()
HDF5StorageManager.is_valid_tvb_file()
HDF5StorageManager.remove_data()
HDF5StorageManager.remove_metadata()
HDF5StorageManager.serialize_bool()
HDF5StorageManager.set_metadata()
HDF5StorageManager.store_data()
xml_metadata_handlers
kube
Package
analyzers
Packagefft
fmri_balloon
BalloonModel
BalloonModel.E0
BalloonModel.RBM
BalloonModel.TE
BalloonModel.V0
BalloonModel.alpha
BalloonModel.balloon_dfun()
BalloonModel.bold_model
BalloonModel.compute_derived_parameters()
BalloonModel.epsilon
BalloonModel.evaluate()
BalloonModel.extended_result_size()
BalloonModel.input_transformation()
BalloonModel.integrator
BalloonModel.neural_input_transformation
BalloonModel.normalize_neural_input
BalloonModel.nu_0
BalloonModel.r_0
BalloonModel.result_shape()
BalloonModel.result_size()
BalloonModel.tau_f
BalloonModel.tau_o
BalloonModel.tau_s
BalloonModel.time_series
BoldModels
NeuralInputTransformations
graph
ica
ica_algorithm
info
metric_kuramoto_index
metric_proxy_metastability
metric_variance_global
metric_variance_of_node_variance
node_coherence
node_complex_coherence
pca
wavelet
basic
Packageexceptions
profile
TvbProfile
TvbProfile.ALL
TvbProfile.COMMAND_PROFILE
TvbProfile.CURRENT_PROFILE_NAME
TvbProfile.LIBRARY_PROFILE
TvbProfile.MATLAB_PROFILE
TvbProfile.REGISTERED_PROFILES
TvbProfile.TEST_LIBRARY_PROFILE
TvbProfile.TEST_POSTGRES_PROFILE
TvbProfile.TEST_SQLITE_PROFILE
TvbProfile.WEB_PROFILE
TvbProfile.current
TvbProfile.env
TvbProfile.is_first_run()
TvbProfile.is_library_mode()
TvbProfile.set_profile()
readers
- Subpackages
config
Packageenvironment
Environment
Environment.PYTHON_FOLDER
Environment.append_to_path()
Environment.get_library_folder()
Environment.is_distribution()
Environment.is_framework_present()
Environment.is_linux()
Environment.is_linux_deployment()
Environment.is_mac()
Environment.is_mac_deployment()
Environment.is_windows()
Environment.is_windows_deployment()
Environment.setup_python_path()
Environment.setup_tk_tcl_environ()
profile_settings
BaseSettingsProfile
BaseSettingsProfile.ACCESS_MODE_TVB_FILES
BaseSettingsProfile.BIN_FOLDER
BaseSettingsProfile.DEFAULT_STORAGE
BaseSettingsProfile.FIRST_RUN_STORAGE
BaseSettingsProfile.LOGGER_CONFIG_FILE_NAME
BaseSettingsProfile.MAGIC_NUMBER
BaseSettingsProfile.PYTHON_INTERPRETER_PATH
BaseSettingsProfile.TVB_CONFIG_FILE
BaseSettingsProfile.TVB_USER_HOME
BaseSettingsProfile.initialize_for_deployment()
BaseSettingsProfile.initialize_profile()
BaseSettingsProfile.prepare_for_operation_mode()
LibrarySettingsProfile
MATLABLibraryProfile
TestLibraryProfile
settings
ClusterSettings
ClusterSettings.CLUSTER_NODE_NAME
ClusterSettings.IN_OPERATION_EXECUTION_PROCESS
ClusterSettings.IS_RUNNING_ON_CLUSTER_NODE
ClusterSettings.JOB_ID_STRING
ClusterSettings.NODE_ENV
ClusterSettings.SCHEDULER_OAR
ClusterSettings.SCHEDULER_SLURM
ClusterSettings.SCHEDULE_COMMAND
ClusterSettings.STATUS_COMMAND
ClusterSettings.STOP_COMMAND
DBSettings
HPCSettings
HPCSettings.CAN_RUN_HPC
HPCSettings.CRYPT_BUFFER_SIZE
HPCSettings.CRYPT_PASS_SIZE
HPCSettings.HPC_LAUNCHER_SH_SCRIPT
HPCSettings.IN_OPERATION_EXECUTION_PROCESS
HPCSettings.JOB_MOUNT_POINT_KEY
HPCSettings.JOB_STATUS_KEY
HPCSettings.UNICORE_ARGS_KEY
HPCSettings.UNICORE_EXE_KEY
HPCSettings.UNICORE_PROJECT_KEY
HPCSettings.UNICORE_RESOURCER_KEY
VersionSettings
WebAdminSettings
WebSettings
stored
utils
logger
Packageneotraits
Package
datatypes
Packageconnectivity
Connectivity
Connectivity.areas
Connectivity.binarized_weights
Connectivity.centres
Connectivity.centres_annular()
Connectivity.centres_cubic()
Connectivity.centres_spherical()
Connectivity.centres_toroidal()
Connectivity.compute_region_labels()
Connectivity.compute_tract_lengths()
Connectivity.configure()
Connectivity.cortical
Connectivity.create_region_labels()
Connectivity.delays
Connectivity.from_bytes_stream()
Connectivity.from_file()
Connectivity.generate_surrogate_connectivity()
Connectivity.get_default_selection()
Connectivity.get_grouped_space_labels()
Connectivity.hemisphere_order_indices
Connectivity.hemispheres
Connectivity.horizon
Connectivity.idelays
Connectivity.is_right_hemisphere()
Connectivity.motif_all_to_all()
Connectivity.motif_chain_directed()
Connectivity.motif_chain_undirected()
Connectivity.motif_linear_directed()
Connectivity.motif_linear_undirected()
Connectivity.number_of_connections
Connectivity.number_of_regions
Connectivity.ordered_centres
Connectivity.ordered_labels
Connectivity.ordered_tracts
Connectivity.ordered_weights
Connectivity.orientations
Connectivity.parent_connectivity
Connectivity.region_labels
Connectivity.saved_selection
Connectivity.saved_selection_labels
Connectivity.scaled_weights()
Connectivity.set_areas()
Connectivity.set_centres()
Connectivity.set_cortical()
Connectivity.set_hemispheres()
Connectivity.set_idelays()
Connectivity.set_orientations()
Connectivity.set_region_labels()
Connectivity.set_tract_lengths()
Connectivity.set_weights()
Connectivity.speed
Connectivity.subcortical_indices
Connectivity.summary_info()
Connectivity.tract_lengths
Connectivity.transform_binarize_matrix()
Connectivity.transform_remove_self_connections()
Connectivity.try_compute_hemispheres()
Connectivity.undirected
Connectivity.unmapped_indices()
Connectivity.weights
cortex
Cortex
Cortex.compute_local_connectivity()
Cortex.configure()
Cortex.coupling_strength
Cortex.from_file()
Cortex.local_connectivity
Cortex.number_of_triangles
Cortex.number_of_vertices
Cortex.prepare_local_coupling()
Cortex.region_mapping
Cortex.region_mapping_data
Cortex.surface
Cortex.triangles
Cortex.vertex_normals
Cortex.vertices
equations
Absolute
Alpha
Cosine
DiscreteEquation
DoubleExponential
DoubleGaussian
Equation
EquationsEnum
FiniteSupportEquation
FirstOrderVolterra
Gamma
Gaussian
GeneralizedSigmoid
HRFKernelEquation
Identity
Linear
Logarithm
MixtureOfGammas
PulseTrain
RescaleInterval
Sigmoid
Sinusoid
SpatialApplicableEquation
TemporalApplicableEquation
fcd
graph
local_connectivity
mode_decompositions
IndependentComponents
IndependentComponents.component_time_series
IndependentComponents.compute_component_time_series()
IndependentComponents.compute_mixing_matrix()
IndependentComponents.compute_norm_source()
IndependentComponents.compute_normalised_component_time_series()
IndependentComponents.mixing_matrix
IndependentComponents.n_components
IndependentComponents.norm_source
IndependentComponents.normalised_component_time_series
IndependentComponents.prewhitening_matrix
IndependentComponents.source
IndependentComponents.summary_info()
IndependentComponents.unmixing_matrix
PrincipalComponents
PrincipalComponents.component_time_series
PrincipalComponents.compute_component_time_series()
PrincipalComponents.compute_norm_source()
PrincipalComponents.compute_normalised_component_time_series()
PrincipalComponents.fractions
PrincipalComponents.norm_source
PrincipalComponents.normalised_component_time_series
PrincipalComponents.source
PrincipalComponents.summary_info()
PrincipalComponents.weights
patterns
projections
region_mapping
sensors
spectral
CoherenceSpectrum
ComplexCoherenceSpectrum
ComplexCoherenceSpectrum.array_data
ComplexCoherenceSpectrum.cross_spectrum
ComplexCoherenceSpectrum.epoch_length
ComplexCoherenceSpectrum.freq_step
ComplexCoherenceSpectrum.frequency
ComplexCoherenceSpectrum.max_freq
ComplexCoherenceSpectrum.segment_length
ComplexCoherenceSpectrum.source
ComplexCoherenceSpectrum.spectrum_types
ComplexCoherenceSpectrum.summary_info()
ComplexCoherenceSpectrum.windowing_function
FourierSpectrum
FourierSpectrum.amplitude
FourierSpectrum.array_data
FourierSpectrum.average_power
FourierSpectrum.compute_amplitude()
FourierSpectrum.compute_average_power()
FourierSpectrum.compute_normalised_average_power()
FourierSpectrum.compute_phase()
FourierSpectrum.compute_power()
FourierSpectrum.configure()
FourierSpectrum.freq_step
FourierSpectrum.frequency
FourierSpectrum.max_freq
FourierSpectrum.normalised_average_power
FourierSpectrum.phase
FourierSpectrum.power
FourierSpectrum.segment_length
FourierSpectrum.source
FourierSpectrum.summary_info()
FourierSpectrum.windowing_function
WaveletCoefficients
WaveletCoefficients.amplitude
WaveletCoefficients.array_data
WaveletCoefficients.compute_amplitude()
WaveletCoefficients.compute_phase()
WaveletCoefficients.compute_power()
WaveletCoefficients.frequencies
WaveletCoefficients.frequency
WaveletCoefficients.mother
WaveletCoefficients.normalisation
WaveletCoefficients.phase
WaveletCoefficients.power
WaveletCoefficients.q_ratio
WaveletCoefficients.sample_period
WaveletCoefficients.source
WaveletCoefficients.summary_info()
WindowingFunctionsEnum
structural
surfaces
BrainSkull
CorticalSurface
EEGCap
FaceSurface
SkinAir
SkullSkin
Surface
Surface.bi_hemispheric
Surface.center()
Surface.compute_equation()
Surface.compute_geodesic_distance_matrix()
Surface.compute_topological_constants()
Surface.compute_triangle_normals()
Surface.compute_vertex_normals()
Surface.configure()
Surface.edge_lengths
Surface.edge_max_length
Surface.edge_mean_length
Surface.edge_min_length
Surface.edge_triangles
Surface.edges
Surface.from_bytes_stream()
Surface.from_file()
Surface.geodesic_distance()
Surface.geodesic_distance_matrix
Surface.hemisphere_mask
Surface.laplace_beltrami()
Surface.nth_ring()
Surface.number_of_edges
Surface.number_of_triangles
Surface.number_of_vertices
Surface.set_scaled_vertices()
Surface.summary_info()
Surface.surface_type
Surface.triangle_angles
Surface.triangle_areas
Surface.triangle_centres
Surface.triangle_normals
Surface.triangles
Surface.valid_for_simulations
Surface.validate()
Surface.validate_topology_for_simulations()
Surface.vertex_neighbours
Surface.vertex_normals
Surface.vertex_triangles
Surface.vertices
Surface.zero_based_triangles
SurfaceTypesEnum
ValidationResult
WhiteMatterSurface
center_vertices()
make_surface()
temporal_correlations
time_series
SensorsTSBase
TimeSeries
TimeSeries.data
TimeSeries.duplicate()
TimeSeries.from_bytes_stream()
TimeSeries.get_state_variable()
TimeSeries.get_subspace_by_index()
TimeSeries.get_subspace_by_labels()
TimeSeries.labels_dimensions
TimeSeries.labels_ordering
TimeSeries.nr_dimensions
TimeSeries.sample_period
TimeSeries.sample_period_ms
TimeSeries.sample_period_unit
TimeSeries.sample_rate
TimeSeries.shape
TimeSeries.space_labels
TimeSeries.start_time
TimeSeries.summary_info()
TimeSeries.time
TimeSeries.time_unit
TimeSeries.title
TimeSeries.variables_labels
TimeSeriesEEG
TimeSeriesMEG
TimeSeriesRegion
TimeSeriesSEEG
TimeSeriesSurface
TimeSeriesVolume
tracts
volumes
rateML
PackageXML2model
RateML
RateML.XSD_validate_XML()
RateML.default_XML_folder()
RateML.default_generation_folder()
RateML.familiarize_TVB()
RateML.init_statevariables()
RateML.load_model()
RateML.parse_args()
RateML.pp_bound()
RateML.pp_cplist()
RateML.pp_noise()
RateML.render()
RateML.render_driver()
RateML.render_model()
RateML.set_XML_model_folder()
RateML.set_driver_location()
RateML.set_generated_model_location()
RateML.set_template()
RateML.swap_language_specific_terms()
RateML.write_model_file()
tmpl8_cuda
tmpl8_driver
tmpl8_python
- Subpackages
generatedModels
Packageepileptor
EpileptorT
EpileptorT.Iext
EpileptorT.Iext2
EpileptorT.Kf
EpileptorT.Ks
EpileptorT.Kvf
EpileptorT.a
EpileptorT.aa
EpileptorT.b
EpileptorT.bb
EpileptorT.c
EpileptorT.cvar
EpileptorT.d
EpileptorT.dfun()
EpileptorT.modification
EpileptorT.r
EpileptorT.s
EpileptorT.slope
EpileptorT.state_variable_range
EpileptorT.state_variables
EpileptorT.tau
EpileptorT.tt
EpileptorT.variables_of_interest
EpileptorT.x0
kuramoto
montbrio
oscillator
OscillatorT
OscillatorT.I
OscillatorT.a
OscillatorT.alpha
OscillatorT.b
OscillatorT.beta
OscillatorT.c
OscillatorT.cvar
OscillatorT.d
OscillatorT.dfun()
OscillatorT.e
OscillatorT.f
OscillatorT.g
OscillatorT.gamma
OscillatorT.state_variable_boundaries
OscillatorT.state_variable_range
OscillatorT.state_variables
OscillatorT.tau
OscillatorT.variables_of_interest
rwongwang
RwongwangT
RwongwangT.G
RwongwangT.I_0
RwongwangT.JI
RwongwangT.J_I
RwongwangT.J_N
RwongwangT.J_NMDA
RwongwangT.a_E
RwongwangT.a_I
RwongwangT.b_E
RwongwangT.b_I
RwongwangT.cvar
RwongwangT.d_E
RwongwangT.d_I
RwongwangT.dfun()
RwongwangT.gamma_E
RwongwangT.gamma_I
RwongwangT.lamda
RwongwangT.state_variable_boundaries
RwongwangT.state_variable_range
RwongwangT.state_variables
RwongwangT.tau_E
RwongwangT.tau_I
RwongwangT.variables_of_interest
RwongwangT.w_E
RwongwangT.w_I
RwongwangT.w_plus
- Subpackages
run
Packagemodel_driver
Driver_Execute
Driver_Execute.cf()
Driver_Execute.compare_with_ref()
Driver_Execute.gpu_mem_info()
Driver_Execute.make_gpu_data()
Driver_Execute.make_kernel()
Driver_Execute.nbytes()
Driver_Execute.plot_output()
Driver_Execute.release_gpumem()
Driver_Execute.run_all()
Driver_Execute.run_simulation()
Driver_Execute.set_CUDA_ref_model_dir()
Driver_Execute.set_CUDAmodel_dir()
Driver_Execute.write_output()
Driver_Setup
model_driver_bold
Driver_Execute
Driver_Execute.cf()
Driver_Execute.compare_with_ref()
Driver_Execute.gpu_mem_info()
Driver_Execute.make_gpu_data()
Driver_Execute.make_kernel()
Driver_Execute.nbytes()
Driver_Execute.plot_output()
Driver_Execute.release_gpumem()
Driver_Execute.run_all()
Driver_Execute.run_simulation()
Driver_Execute.set_CUDA_ref_model_dir()
Driver_Execute.set_CUDAmodel_dir()
Driver_Execute.write_output()
Driver_Setup
model_driver_heun
model_driver_zerlaut
Driver_Execute
Driver_Execute.cf()
Driver_Execute.compare_with_ref()
Driver_Execute.gpu_mem_info()
Driver_Execute.make_gpu_data()
Driver_Execute.make_kernel()
Driver_Execute.nbytes()
Driver_Execute.plot_output()
Driver_Execute.release_gpumem()
Driver_Execute.run_all()
Driver_Execute.run_simulation()
Driver_Execute.set_CUDA_ref_model_dir()
Driver_Execute.set_CUDAmodel_dir()
Driver_Execute.write_output()
Driver_Setup
regular_run
simulator
PackageSimulator
Simulator
Simulator.TYPES_TO_DEEPCOPY
Simulator.backend
Simulator.calls
Simulator.conduction_speed
Simulator.configure()
Simulator.configure_integration_for_model()
Simulator.connectivity
Simulator.coupling
Simulator.current_step
Simulator.duplicate()
Simulator.gid
Simulator.good_history_shape
Simulator.history
Simulator.initial_conditions
Simulator.integrate_next_step
Simulator.integrator
Simulator.is_surface_simulation
Simulator.memory_requirement()
Simulator.model
Simulator.monitors
Simulator.number_of_nodes
Simulator.preconfigure()
Simulator.run()
Simulator.runtime()
Simulator.set_title()
Simulator.simulation_length
Simulator.stimulus
Simulator.storage_requirement()
Simulator.summary_info()
Simulator.surface
Simulator.tag()
Simulator.tags
Simulator.validate()
Coupling
models
PackageModelsEnum
ModelsEnum.BASE_MODEL
ModelsEnum.COOMBES_BYRNE
ModelsEnum.COOMBES_BYRNE_2D
ModelsEnum.DECO_BALANCED_EXC_INH
ModelsEnum.DUMONT_GUTKIN
ModelsEnum.EPILEPTOR
ModelsEnum.EPILEPTOR_2D
ModelsEnum.EPILEPTOR_CODIM_3
ModelsEnum.EPILEPTOR_CODIM_3_SLOW
ModelsEnum.EPILEPTOR_RS
ModelsEnum.GAST_SCHMIDT_KNOSCHE_SD
ModelsEnum.GAST_SCHMIDT_KNOSCHE_SF
ModelsEnum.GENERIC_2D_OSCILLATOR
ModelsEnum.HOPFIELD
ModelsEnum.JANSEN_RIT
ModelsEnum.KURAMOTO
ModelsEnum.K_ION_EXCHANGE
ModelsEnum.LARTER_BREAKSPEAR
ModelsEnum.LINEAR
ModelsEnum.MONTBRIO_PAZO_ROXIN
ModelsEnum.REDUCED_SET_FITZ_HUGH_NAGUMO
ModelsEnum.REDUCED_SET_HINDMARSH_ROSE
ModelsEnum.REDUCED_WONG_WANG
ModelsEnum.REDUCED_WONG_WANG_EXC_INH
ModelsEnum.SUP_HOPF
ModelsEnum.WILSON_COWAN
ModelsEnum.ZERLAUT_FIRST_ORDER
ModelsEnum.ZERLAUT_SECOND_ORDER
ModelsEnum.ZETTERBERG_JANSEN
ModelsEnum.get_base_model_subclasses()
ModelsEnum.get_class()
base
Model
Model.configure()
Model.cvar
Model.dfun()
Model.global_parameter_names
Model.has_nonint_vars
Model.initial()
Model.initial_for_simulator()
Model.nintvar
Model.nnonintvar
Model.non_integrated_variables
Model.number_of_modes
Model.nvar
Model.spatial_param_reshape
Model.spatial_parameter_matrix
Model.spatial_parameter_names
Model.state_variable_boundaries
Model.state_variable_mask
Model.state_variables
Model.stationary_trajectory()
Model.stvar
Model.update_derived_parameters()
Model.update_state_variables_after_integration()
Model.update_state_variables_before_integration()
Model.variables_of_interest
ModelNumbaDfun
epileptor
Epileptor
Epileptor.Iext
Epileptor.Iext2
Epileptor.Kf
Epileptor.Ks
Epileptor.Kvf
Epileptor.a
Epileptor.aa
Epileptor.b
Epileptor.bb
Epileptor.c
Epileptor.cvar
Epileptor.d
Epileptor.dfun()
Epileptor.modification
Epileptor.r
Epileptor.s
Epileptor.slope
Epileptor.state_variable_range
Epileptor.state_variables
Epileptor.tau
Epileptor.tt
Epileptor.variables_of_interest
Epileptor.x0
Epileptor2D
Epileptor2D.Iext
Epileptor2D.Ks
Epileptor2D.Kvf
Epileptor2D.a
Epileptor2D.b
Epileptor2D.c
Epileptor2D.cvar
Epileptor2D.d
Epileptor2D.dfun()
Epileptor2D.modification
Epileptor2D.r
Epileptor2D.slope
Epileptor2D.state_variable_range
Epileptor2D.state_variables
Epileptor2D.tt
Epileptor2D.variables_of_interest
Epileptor2D.x0
hopfield
jansen_rit
JansenRit
JansenRit.A
JansenRit.B
JansenRit.J
JansenRit.a
JansenRit.a_1
JansenRit.a_2
JansenRit.a_3
JansenRit.a_4
JansenRit.b
JansenRit.cvar
JansenRit.dfun()
JansenRit.mu
JansenRit.nu_max
JansenRit.p_max
JansenRit.p_min
JansenRit.r
JansenRit.state_variable_range
JansenRit.state_variables
JansenRit.v0
JansenRit.variables_of_interest
ZetterbergJansen
ZetterbergJansen.He
ZetterbergJansen.Heke
ZetterbergJansen.Hi
ZetterbergJansen.Hiki
ZetterbergJansen.P
ZetterbergJansen.Q
ZetterbergJansen.U
ZetterbergJansen.cvar
ZetterbergJansen.dfun()
ZetterbergJansen.e0
ZetterbergJansen.gamma_1
ZetterbergJansen.gamma_1T
ZetterbergJansen.gamma_2
ZetterbergJansen.gamma_2T
ZetterbergJansen.gamma_3
ZetterbergJansen.gamma_3T
ZetterbergJansen.gamma_4
ZetterbergJansen.gamma_5
ZetterbergJansen.ke
ZetterbergJansen.ke_2
ZetterbergJansen.keke
ZetterbergJansen.ki
ZetterbergJansen.ki_2
ZetterbergJansen.kiki
ZetterbergJansen.rho_1
ZetterbergJansen.rho_2
ZetterbergJansen.sigma_fun()
ZetterbergJansen.state_variable_range
ZetterbergJansen.state_variables
ZetterbergJansen.update_derived_parameters()
ZetterbergJansen.variables_of_interest
larter_breakspear
LarterBreakspear
LarterBreakspear.C
LarterBreakspear.Iext
LarterBreakspear.QV_max
LarterBreakspear.QZ_max
LarterBreakspear.TCa
LarterBreakspear.TK
LarterBreakspear.TNa
LarterBreakspear.VCa
LarterBreakspear.VK
LarterBreakspear.VL
LarterBreakspear.VNa
LarterBreakspear.VT
LarterBreakspear.ZT
LarterBreakspear.aee
LarterBreakspear.aei
LarterBreakspear.aie
LarterBreakspear.ane
LarterBreakspear.ani
LarterBreakspear.b
LarterBreakspear.cvar
LarterBreakspear.d_Ca
LarterBreakspear.d_K
LarterBreakspear.d_Na
LarterBreakspear.d_V
LarterBreakspear.d_Z
LarterBreakspear.dfun()
LarterBreakspear.gCa
LarterBreakspear.gK
LarterBreakspear.gL
LarterBreakspear.gNa
LarterBreakspear.phi
LarterBreakspear.rNMDA
LarterBreakspear.state_variable_range
LarterBreakspear.state_variables
LarterBreakspear.t_scale
LarterBreakspear.tau_K
LarterBreakspear.variables_of_interest
linear
oscillator
Generic2dOscillator
Generic2dOscillator.dfun()
Generic2dOscillator.I
Generic2dOscillator.a
Generic2dOscillator.alpha
Generic2dOscillator.b
Generic2dOscillator.beta
Generic2dOscillator.c
Generic2dOscillator.cvar
Generic2dOscillator.d
Generic2dOscillator.dfun()
Generic2dOscillator.e
Generic2dOscillator.f
Generic2dOscillator.g
Generic2dOscillator.gamma
Generic2dOscillator.state_variable_range
Generic2dOscillator.state_variables
Generic2dOscillator.tau
Generic2dOscillator.variables_of_interest
Kuramoto
SupHopf
stefanescu_jirsa
ReducedSetBase
ReducedSetFitzHughNagumo
ReducedSetFitzHughNagumo.update_derived_parameters()
ReducedSetFitzHughNagumo.Aik
ReducedSetFitzHughNagumo.Bik
ReducedSetFitzHughNagumo.Cik
ReducedSetFitzHughNagumo.IE_i
ReducedSetFitzHughNagumo.II_i
ReducedSetFitzHughNagumo.K11
ReducedSetFitzHughNagumo.K12
ReducedSetFitzHughNagumo.K21
ReducedSetFitzHughNagumo.a
ReducedSetFitzHughNagumo.b
ReducedSetFitzHughNagumo.cvar
ReducedSetFitzHughNagumo.dfun()
ReducedSetFitzHughNagumo.e_i
ReducedSetFitzHughNagumo.f_i
ReducedSetFitzHughNagumo.m_i
ReducedSetFitzHughNagumo.mu
ReducedSetFitzHughNagumo.n_i
ReducedSetFitzHughNagumo.sigma
ReducedSetFitzHughNagumo.state_variable_range
ReducedSetFitzHughNagumo.state_variables
ReducedSetFitzHughNagumo.tau
ReducedSetFitzHughNagumo.update_derived_parameters()
ReducedSetFitzHughNagumo.variables_of_interest
ReducedSetHindmarshRose
ReducedSetHindmarshRose.update_derived_parameters()
ReducedSetHindmarshRose.A_ik
ReducedSetHindmarshRose.B_ik
ReducedSetHindmarshRose.C_ik
ReducedSetHindmarshRose.IE_i
ReducedSetHindmarshRose.II_i
ReducedSetHindmarshRose.K11
ReducedSetHindmarshRose.K12
ReducedSetHindmarshRose.K21
ReducedSetHindmarshRose.a
ReducedSetHindmarshRose.a_i
ReducedSetHindmarshRose.b
ReducedSetHindmarshRose.b_i
ReducedSetHindmarshRose.c
ReducedSetHindmarshRose.c_i
ReducedSetHindmarshRose.cvar
ReducedSetHindmarshRose.d
ReducedSetHindmarshRose.d_i
ReducedSetHindmarshRose.dfun()
ReducedSetHindmarshRose.e_i
ReducedSetHindmarshRose.f_i
ReducedSetHindmarshRose.h_i
ReducedSetHindmarshRose.m_i
ReducedSetHindmarshRose.mu
ReducedSetHindmarshRose.n_i
ReducedSetHindmarshRose.p_i
ReducedSetHindmarshRose.r
ReducedSetHindmarshRose.s
ReducedSetHindmarshRose.sigma
ReducedSetHindmarshRose.state_variable_range
ReducedSetHindmarshRose.state_variables
ReducedSetHindmarshRose.update_derived_parameters()
ReducedSetHindmarshRose.variables_of_interest
ReducedSetHindmarshRose.xo
wilson_cowan
WilsonCowan
WilsonCowan.P
WilsonCowan.Q
WilsonCowan.a_e
WilsonCowan.a_i
WilsonCowan.alpha_e
WilsonCowan.alpha_i
WilsonCowan.b_e
WilsonCowan.b_i
WilsonCowan.c_e
WilsonCowan.c_ee
WilsonCowan.c_ei
WilsonCowan.c_i
WilsonCowan.c_ie
WilsonCowan.c_ii
WilsonCowan.cvar
WilsonCowan.dfun()
WilsonCowan.k_e
WilsonCowan.k_i
WilsonCowan.r_e
WilsonCowan.r_i
WilsonCowan.shift_sigmoid
WilsonCowan.state_variable_range
WilsonCowan.state_variables
WilsonCowan.tau_e
WilsonCowan.tau_i
WilsonCowan.theta_e
WilsonCowan.theta_i
WilsonCowan.variables_of_interest
wong_wang
ReducedWongWang
ReducedWongWang.I_o
ReducedWongWang.J_N
ReducedWongWang.a
ReducedWongWang.b
ReducedWongWang.configure()
ReducedWongWang.cvar
ReducedWongWang.d
ReducedWongWang.dfun()
ReducedWongWang.gamma
ReducedWongWang.sigma_noise
ReducedWongWang.state_variable_boundaries
ReducedWongWang.state_variable_range
ReducedWongWang.state_variables
ReducedWongWang.tau_s
ReducedWongWang.variables_of_interest
ReducedWongWang.w
Integrators
Integrator
Integrator.dt
Integrator.bounded_state_variable_indices
Integrator.state_variable_boundaries
Integrator.clamped_state_variable_indices
Integrator.clamped_state_variable_values
Integrator.scheme()
Integrator.set_random_state()
Integrator.configure()
Integrator.configure_boundaries()
Integrator.reconfigure_boundaries_and_clamping_for_integration_state_variables()
Integrator.bound_state()
Integrator.bound_integration_state()
Integrator.clamp_state()
Integrator.clamp_integration_state()
Integrator.bound_and_clamp()
Integrator.integration_bound_and_clamp()
Integrator.integrate_with_update()
Integrator.integrate()
IntegratorStochastic
HeunDeterministic
HeunStochastic
EulerDeterministic
EulerStochastic
RungeKutta4thOrderDeterministic
Identity
IdentityStochastic
SciPyODEBase
SciPyODE
SciPySDE
VODE
VODEStochastic
Dopri5
Dopri5Stochastic
Dop853
Dop853Stochastic
Noise
Monitors
- Suggested Coding Conventions.
history
BaseHistory
DenseHistory
SparseHistory
SparseHistory.const_indices
SparseHistory.n_nnzr
SparseHistory.n_nnzw
SparseHistory.nbytes
SparseHistory.nnz_col_el_idx
SparseHistory.nnz_idelays
SparseHistory.nnz_mask
SparseHistory.nnz_row_el_idx
SparseHistory.nnz_row_idx
SparseHistory.nnz_weights
SparseHistory.query()
SparseHistory.query_sparse()
SparseHistory.time_stride
common
descriptors