brco Package

parser

class tvb.adapters.uploaders.brco.parser.XMLParser(xml_file, region_labels)

Bases: object

Parser for XML with Connectivity annotations

ATTR_ONTOLOGY_DEFINITION = 'definition'

ATTR_ONTOLOGY_LABEL = 'label'

ATTR_ONTOLOGY_RELATION = 'relation'

ATTR_ONTOLOGY_SYN = 'synonym'

ATTR_ONTOLOGY_URI = 'uri'

ATTR_TVB_ID = 'id'

ATTR_TVB_LABEL = 'label'

LOGGER = <Logger tvb.adapters.uploaders.brco.parser (INFO)>

PREFIX_LEFT = ['l', 'L', 'left', 'Left']

PREFIX_RIGHT = ['r', 'R', 'right', 'Right']

PREFIX_TVB_ID = 'http://thevirtualbrain.org#'

read_annotation_terms()

Process XML file. :return List of AnnotationTerm instances.