GUI tutorials

0. Getting Started

1. Building Your Own Brain Network Model

2. Resting State Networks (work in progress)

3. Modeling Epilepsy

Scripting tutorials

These tutorials are written as IPython Notebooks and they use the scripting interface of TVB. They can be run interactively if you have TVB’s scientific library and ipython installed.

1. Region simulation tutorial

2. Surface simulation tutorial

3. Exploring a neural mass model

4. Evoked Responses In The Visual Cortex

5. Resting State Networks

6. Modeling Epilepsy

Video tutorials

The TVB EduPack on the TVB main website contains dozens of video lectures explaining TVB’s GUI and scripting interfaces. Some lectures help you reproduce the research done for a peer-reviewed neuroscience publication:

• Basics: My first simulation with The Virtual Brain, lecture by Paul Triebkorn

• Basics: Population Models in The Virtual Brain (TVB) and the Phase Plane, lecture by Dr. Michael Schirner

• Epilepsy: Modelling Epilepsy with The Virtual Brain, lecture by Julie Courtiol

• Epilepsy: The Bayesian Virtual Epileptic Patient (BVEP), lecture by Meysam Hashemi

• Stimulation: Brain stimulation in The Virtual Brain, lecture by Andreas Spiegler

• Stimulation: Surface-based simulations and deep brain stimulations, lecture by Jil Meier

• Stroke: TVB Clinical Applications - Stroke Recovery & Dementia, lecture by Randy McIntosh

• Stroke: Hands-On: Modeling stroke brain, lecture by Paul Triebkorn

• Model construction: Import Virtual Brain ready data into TVB and create a brain model, lecture by Patrik Bey

• Model construction: Integrated workflows: Image processing pipeline, lecture by Dr. Michael Schirner

• Special applications: Modeling brain dynamics in brain tumor patients using The Virtual Brain

• Special applications: Simulating The Virtual Mouse Brain (TVMB), lecture by Patrik Bey

• Advanced simulation: Human Brain Project (HBP) TVB-NEST co-simulation

• Advanced simulation: TVB to NEST multi-scale simulation, lecture by Dionysios Perdikis