burst Package

base_controller

class tvb.interfaces.web.controllers.burst.base_controller.BurstBaseController

Bases: BaseController

fill_default_attributes(template_dictionary, subsection='burst')

Fill into ‘template_dictionary’ data that we want to have ready in UI.

dynamic_model_controller

class tvb.interfaces.web.controllers.burst.dynamic_model_controller.Dynamic(model=None, integrator=None)

Bases: object

Groups a model and an integrator.

class tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController

Bases: BurstBaseController

KEY_CACHED_DYNAMIC_MODEL = 'cache.DynamicModelController'

LOGGER = <Logger tvb.interfaces.web.controllers.burst.dynamic_model_controller (INFO)>

dynamic_detail(dynamic_id)

fill_default_attributes(param)

Fill into ‘template_dictionary’ data that we want to have ready in UI.

get_cached_dynamic(dynamic_gid)

Creating the model per request will be expensive. So we cache it in session. If there is nothing cached it returns the default dynamic.

graph_changed(dynamic_gid, graph_state)

index()

/ Path response Redirects to /tvb

integrator_parameters_changed(dynamic_gid, type, **param)

model_changed(dynamic_gid, name)

Resets the phase plane and returns the ui model for the slider area.

parameters_changed(dynamic_gid, params)

refresh_subform(dynamic_gid, field_value)

submit(dynamic_gid, dynamic_name)

trajectories(dynamic_gid, starting_points, integration_steps)

class tvb.interfaces.web.controllers.burst.dynamic_model_controller.SessionCache

Bases: object

A simple cache backed by the current cherrypy session. It does not expire it’s contents.

SESSION_KEY = 'session_cache'

exploration_controller

class tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController

Bases: BaseController

Controller to handle PSE actions.

draw_discrete_exploration(datatype_group_gid, back_page, color_metric=None, size_metric=None)

Create new data for when the user chooses to refresh from the UI.

draw_isocline_exploration(datatype_group_gid)

get_default_pse_viewer(datatype_group_gid)

For a given DataTypeGroup, check first if the discrete PSE is compatible. If this is not the case fallback to the continous PSE viewer. If none are available return: None.

get_metric_matrix(datatype_group_gid, metric_name=None)

get_node_matrix(datatype_group_gid)

get_series_array_discrete(datatype_group_gid, back_page, color_metric=None, size_metric=None)

Create new data for when the user chooses to refresh from the UI.

pse_error(adapter_name, message)

matjax

Functions responsible for collecting and rendering the descriptions and the documentations of the dynamic models in Simulator/Phase Plane.

tvb.interfaces.web.controllers.burst.matjax.configure_matjax_doc()

Builds a list containing the model names, inline descriptions and descriptions, which will be displayed in the Simulation/Phase Plane section.

noise_configuration_controller

class tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController

Bases: BurstBaseController

Controller class for placing noise parameters in nodes.

static group_noise_array_by_state_var(noise_values, state_vars, number_of_regions)

index()

/ Path response Redirects to /tvb

static init_noise_config_values(model, integrator, connectivity)

Initialize a state var x number of nodes array with noise values.

submit(node_values)

Submit noise dispersions :param node_values: A map from state variable names to noise dispersion arrays. Ex {‘V’: [1,2…74]}

region_model_parameters_controller

class tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController

Bases: BurstBaseController

Controller class for placing model parameters in nodes.

index()

/ Path response Redirects to /tvb

no_dynamics_page()

submit_model_parameters(node_values)

Collects the model parameters values from all the models used for the connectivity nodes. Assumes that the array indices are consistent with the node order.

transfer_vector_controller

class tvb.interfaces.web.controllers.burst.transfer_vector_controller.TransferVectorController

Bases: SpatioTemporalController

Controller class for Applying a transfer function plus a ConnectivityMeasure DT and producing a Spatial Vector distribution on Model parameters

apply_transfer_function()

base_url = '/burst/transfer/'

clear_histogram()

fill_default_attributes(template_dictionary, subsection='transfer')

Overwrite base controller to add required parameters for adapter templates.

get_equation_chart(**form_data)

Returns the html which contains the plot with the equation selected by the user for a certain model param.

index()

Displays the main page for the spatio temporal section.

no_connectivity_measure_page()

set_connectivity_measure(connectivity_measure)

set_model_parameter(model_param)

set_transfer_function_param(**param)

submit_model_parameter(submit_action='cancel_action')

title = 'Apply Spatial Vector on Model Parameter(s)'