db
Package¶
This is the module where all TVB Index DataTypes are hooked into the framework.
Define in __all__ attribute, modules to be introspected for finding their classes.
annotation
¶
- class tvb.adapters.datatypes.db.annotation.AnnotationTerm(id, parent, parent_left, parent_right, relation, label, definition=None, synonym=None, uri=None, tvb_left=None, tvb_right=None)[source]¶
Bases:
object
One single annotation node (in the tree of annotations / region)
- class tvb.adapters.datatypes.db.annotation.ConnectivityAnnotationsIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
Ontology annotations for a Connectivity.
- annotations_length¶
- connectivity¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: ConnectivityAnnotations) None [source]¶
- fk_connectivity_gid¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
connectivity
¶
- class tvb.adapters.datatypes.db.connectivity.ConnectivityIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- property display_name¶
Overwrite from superclass and add number of regions field
- fill_from_has_traits(datatype: Connectivity) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- has_cortical_mask¶
- has_hemispheres_mask¶
- id¶
- invalid¶
- is_nan¶
- module¶
- number_of_connections¶
- number_of_regions¶
- parent_operation¶
- state¶
- subject¶
- title¶
- tract_lengths_max¶
- tract_lengths_mean¶
- tract_lengths_min¶
- type¶
- type_¶
- undirected¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- weights_max¶
- weights_mean¶
- weights_min¶
fcd
¶
- class tvb.adapters.datatypes.db.fcd.FcdIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_ordering¶
- module¶
- ndim¶
- parent_operation¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
graph
¶
- class tvb.adapters.datatypes.db.graph.ConnectivityMeasureIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- connectivity¶
- create_date¶
- disk_size¶
- property display_name¶
Overwrite from superclass and add number of regions field
- fill_from_has_traits(datatype: ConnectivityMeasure) None [source]¶
- fk_connectivity_gid¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- has_surface_mapping¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- module¶
- ndim¶
- parent_operation¶
- shape¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.graph.CorrelationCoefficientsIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: CorrelationCoefficients) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_ordering¶
- module¶
- ndim¶
- parent_operation¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.graph.CovarianceIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: Covariance) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- module¶
- ndim¶
- parent_operation¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
local_connectivity
¶
- class tvb.adapters.datatypes.db.local_connectivity.LocalConnectivityIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: LocalConnectivity) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_surface_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- matrix_non_zero_max¶
- matrix_non_zero_mean¶
- matrix_non_zero_min¶
- module¶
- parent_operation¶
- state¶
- subject¶
- surface¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
mapped_value
¶
- class tvb.adapters.datatypes.db.mapped_value.DatatypeMeasureIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
Class to hold the metric for a previous stored DataType. E.g. Measure (single value) for any TimeSeries resulted in a group of Simulations
- create_date¶
- disk_size¶
- property display_name¶
To be implemented in each sub-class which is about to be displayed in UI, and return the text to appear.
- fill_from_has_traits(datatype: DatatypeMeasure) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- metrics¶
- module¶
- parent_operation¶
- source¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.mapped_value.ValueWrapperIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
Class to wrap a singular value storage in DB.
- create_date¶
- data_name¶
- data_type¶
- data_value¶
- disk_size¶
- property display_name¶
Simple String to be used for display in UI.
- fill_from_has_traits(datatype: ValueWrapper) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
mode_decompositions
¶
- class tvb.adapters.datatypes.db.mode_decompositions.IndependentComponentsIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- array_has_complex¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: IndependentComponents) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- ndim¶
- parent_operation¶
- property parsed_shape¶
- shape¶
- source¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.mode_decompositions.PrincipalComponentsIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: PrincipalComponents) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- source¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
patterns
¶
- class tvb.adapters.datatypes.db.patterns.SpatioTemporalPatternIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: SpatioTemporalPattern) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- spatial_equation¶
- spatial_parameters¶
- state¶
- subject¶
- temporal_equation¶
- temporal_parameters¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.patterns.StimuliRegionIndex(gid=None, **kwargs)[source]¶
Bases:
SpatioTemporalPatternIndex
- connectivity¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: StimuliRegion) None [source]¶
- fk_connectivity_gid¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- spatial_equation¶
- spatial_parameters¶
- state¶
- subject¶
- temporal_equation¶
- temporal_parameters¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.patterns.StimuliSurfaceIndex(gid=None, **kwargs)[source]¶
Bases:
SpatioTemporalPatternIndex
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: StimuliSurface) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_surface_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- spatial_equation¶
- spatial_parameters¶
- state¶
- subject¶
- surface¶
- temporal_equation¶
- temporal_parameters¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
projections
¶
- class tvb.adapters.datatypes.db.projections.ProjectionMatrixIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- brain_skull¶
- create_date¶
- disk_size¶
- property display_name¶
Overwrite from superclass and add subtype
- fill_from_has_traits(datatype: ProjectionMatrix) None [source]¶
- fk_brain_skull_gid¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_sensors_gid¶
- fk_skin_air_gid¶
- fk_skull_skin_gid¶
- fk_source_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- projection_type¶
- sensors¶
- skin_air¶
- skull_skin¶
- source¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
region_mapping
¶
- class tvb.adapters.datatypes.db.region_mapping.RegionMappingIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- after_store()[source]¶
In case associated ConnectivityMeasureIndex entities already exist in the system and they are compatible with the current RegionMappingIndex, change their flag has_surface_mapping True
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- connectivity¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: RegionMapping) None [source]¶
- fk_connectivity_gid¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_surface_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- state¶
- subject¶
- surface¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.region_mapping.RegionVolumeMappingIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- after_store()[source]¶
In case associated ConnectivityMeasureIndex entities already exist in the system and they are compatible with the current RegionVolumeMappingIndex, change their flag has_volume_mapping True
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- connectivity¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: RegionVolumeMapping) None [source]¶
- fk_connectivity_gid¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_volume_gid¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- module¶
- ndim¶
- parent_operation¶
- shape¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- volume¶
sensors
¶
- class tvb.adapters.datatypes.db.sensors.SensorsIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- property display_name¶
Overwrite from superclass and add number of sensors and subtype
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- number_of_sensors¶
- parent_operation¶
- sensors_type¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
simulation_history
¶
- class tvb.adapters.datatypes.db.simulation_history.SimulationHistoryIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: SimulationHistory) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
spectral
¶
- class tvb.adapters.datatypes.db.spectral.CoherenceSpectrumIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: CoherenceSpectrum) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- frequencies_max¶
- frequencies_min¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- module¶
- ndim¶
- nfft¶
- parent_operation¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.spectral.ComplexCoherenceSpectrumIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- epoch_length¶
- fill_from_has_traits(datatype: ComplexCoherenceSpectrum) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- frequency_step¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- max_frequency¶
- module¶
- ndim¶
- parent_operation¶
- segment_length¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- windowing_function¶
- class tvb.adapters.datatypes.db.spectral.FourierSpectrumIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: FourierSpectrum) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- frequency_step¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- max_frequency¶
- module¶
- ndim¶
- parent_operation¶
- segment_length¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- windowing_function¶
- class tvb.adapters.datatypes.db.spectral.WaveletCoefficientsIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: WaveletCoefficients) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- frequencies_max¶
- frequencies_min¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- module¶
- mother¶
- ndim¶
- normalisation¶
- number_of_scales¶
- parent_operation¶
- q_ratio¶
- sample_period¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
structural
¶
- class tvb.adapters.datatypes.db.structural.StructuralMRIIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: StructuralMRI) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_volume_gid¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- module¶
- ndim¶
- parent_operation¶
- shape¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- volume¶
- weighting¶
surface
¶
- class tvb.adapters.datatypes.db.surface.SurfaceIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- bi_hemispheric¶
- create_date¶
- disk_size¶
- property display_name¶
Overwrite from superclass and subtype
- edge_max_length¶
- edge_mean_length¶
- edge_min_length¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- number_of_edges¶
- number_of_triangles¶
- number_of_vertices¶
- parent_operation¶
- state¶
- subject¶
- surface_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- valid_for_simulations¶
- visible¶
temporal_correlations
¶
- class tvb.adapters.datatypes.db.temporal_correlations.CrossCorrelationIndex(gid=None, **kwargs)[source]¶
Bases:
DataTypeMatrix
- array_data_max¶
- array_data_mean¶
- array_data_min¶
- array_has_complex¶
- array_is_finite¶
- create_date¶
- disk_size¶
- fill_from_has_traits(datatype: CrossCorrelation) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_source_gid¶
- gid¶
- has_valid_time_series¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_ordering¶
- module¶
- ndim¶
- parent_operation¶
- shape¶
- source¶
- state¶
- subject¶
- subtype¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
time_series
¶
- class tvb.adapters.datatypes.db.time_series.TimeSeriesEEGIndex(gid=None, **kwargs)[source]¶
Bases:
TimeSeriesIndex
- create_date¶
- data_length_1d¶
- data_length_2d¶
- data_length_3d¶
- data_length_4d¶
- data_ndim¶
- disk_size¶
- fill_from_has_traits(datatype: TimeSeriesEEG) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_sensors_gid¶
- gid¶
- has_surface_mapping¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_dimensions¶
- labels_ordering¶
- module¶
- parent_operation¶
- sample_period¶
- sample_period_unit¶
- sample_rate¶
- sensors¶
- start_time¶
- state¶
- subject¶
- time_series_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.time_series.TimeSeriesIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- data_length_1d¶
- data_length_2d¶
- data_length_3d¶
- data_length_4d¶
- data_ndim¶
- disk_size¶
- fill_from_has_traits(datatype: TimeSeries) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- has_surface_mapping¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_dimensions¶
- labels_ordering¶
- module¶
- parent_operation¶
- sample_period¶
- sample_period_unit¶
- sample_rate¶
- start_time¶
- state¶
- subject¶
- time_series_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.time_series.TimeSeriesMEGIndex(gid=None, **kwargs)[source]¶
Bases:
TimeSeriesIndex
- create_date¶
- data_length_1d¶
- data_length_2d¶
- data_length_3d¶
- data_length_4d¶
- data_ndim¶
- disk_size¶
- fill_from_has_traits(datatype: TimeSeriesMEG) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_sensors_gid¶
- gid¶
- has_surface_mapping¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_dimensions¶
- labels_ordering¶
- module¶
- parent_operation¶
- sample_period¶
- sample_period_unit¶
- sample_rate¶
- sensors¶
- start_time¶
- state¶
- subject¶
- time_series_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.time_series.TimeSeriesRegionIndex(gid=None, **kwargs)[source]¶
Bases:
TimeSeriesIndex
- connectivity¶
- create_date¶
- data_length_1d¶
- data_length_2d¶
- data_length_3d¶
- data_length_4d¶
- data_ndim¶
- disk_size¶
- fill_from_has_traits(datatype: TimeSeriesRegion) None [source]¶
- fk_connectivity_gid¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_region_mapping_gid¶
- fk_region_mapping_volume_gid¶
- gid¶
- has_surface_mapping¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_dimensions¶
- labels_ordering¶
- module¶
- parent_operation¶
- region_mapping¶
- region_mapping_volume¶
- sample_period¶
- sample_period_unit¶
- sample_rate¶
- start_time¶
- state¶
- subject¶
- time_series_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.time_series.TimeSeriesSEEGIndex(gid=None, **kwargs)[source]¶
Bases:
TimeSeriesIndex
- create_date¶
- data_length_1d¶
- data_length_2d¶
- data_length_3d¶
- data_length_4d¶
- data_ndim¶
- disk_size¶
- fill_from_has_traits(datatype: TimeSeriesSEEG) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_sensors_gid¶
- gid¶
- has_surface_mapping¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_dimensions¶
- labels_ordering¶
- module¶
- parent_operation¶
- sample_period¶
- sample_period_unit¶
- sample_rate¶
- sensors¶
- start_time¶
- state¶
- subject¶
- time_series_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.time_series.TimeSeriesSurfaceIndex(gid=None, **kwargs)[source]¶
Bases:
TimeSeriesIndex
- create_date¶
- data_length_1d¶
- data_length_2d¶
- data_length_3d¶
- data_length_4d¶
- data_ndim¶
- disk_size¶
- fill_from_has_traits(datatype: TimeSeriesSurface) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_surface_gid¶
- gid¶
- has_surface_mapping¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_dimensions¶
- labels_ordering¶
- module¶
- parent_operation¶
- sample_period¶
- sample_period_unit¶
- sample_rate¶
- start_time¶
- state¶
- subject¶
- surface¶
- time_series_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- class tvb.adapters.datatypes.db.time_series.TimeSeriesVolumeIndex(gid=None, **kwargs)[source]¶
Bases:
TimeSeriesIndex
- create_date¶
- data_length_1d¶
- data_length_2d¶
- data_length_3d¶
- data_length_4d¶
- data_ndim¶
- disk_size¶
- fill_from_has_traits(datatype: TimeSeriesVolume) None [source]¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_volume_gid¶
- gid¶
- has_surface_mapping¶
- has_volume_mapping¶
- id¶
- invalid¶
- is_nan¶
- labels_dimensions¶
- labels_ordering¶
- module¶
- parent_operation¶
- sample_period¶
- sample_period_unit¶
- sample_rate¶
- start_time¶
- state¶
- subject¶
- time_series_type¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- volume¶
tracts
¶
- class tvb.adapters.datatypes.db.tracts.TractsIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- fk_region_volume_map_gid¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- parent_operation¶
- region_volume_map¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
volume
¶
- class tvb.adapters.datatypes.db.volume.VolumeIndex(gid=None, **kwargs)[source]¶
Bases:
DataType
- create_date¶
- disk_size¶
- fk_datatype_group¶
- fk_from_operation¶
- fk_parent_burst¶
- gid¶
- id¶
- invalid¶
- is_nan¶
- module¶
- origin¶
- parent_operation¶
- property parsed_origin¶
- property parsed_voxel_size¶
- state¶
- subject¶
- title¶
- type¶
- type_¶
- user_tag_1¶
- user_tag_2¶
- user_tag_3¶
- user_tag_4¶
- user_tag_5¶
- visible¶
- voxel_size¶
- voxel_unit¶