rateML
Package¶
XML2model
¶
LEMS2python module implements a DSL code generation using a TVB-specific LEMS-based DSL.
- class tvb.rateML.XML2model.RateML(model_filename=None, language=None, XMLfolder=None, GENfolder=None)[source]¶
Bases:
object
- XSD_validate_XML()[source]¶
Use own validation instead of LEMS because of slight difference in definition file
- familiarize_TVB(model_str)[source]¶
Write new model to TVB model location and into init.py such it is familiar to TVB if not already present This is for Python models only
tmpl8_cuda
¶
tmpl8_driver
¶
tmpl8_python
¶
Subpackages¶
generatedModels
Packageepileptor
EpileptorT
EpileptorT.Iext
EpileptorT.Iext2
EpileptorT.Kf
EpileptorT.Ks
EpileptorT.Kvf
EpileptorT.a
EpileptorT.aa
EpileptorT.b
EpileptorT.bb
EpileptorT.c
EpileptorT.cvar
EpileptorT.d
EpileptorT.dfun()
EpileptorT.modification
EpileptorT.r
EpileptorT.s
EpileptorT.slope
EpileptorT.state_variable_range
EpileptorT.state_variables
EpileptorT.tau
EpileptorT.tt
EpileptorT.variables_of_interest
EpileptorT.x0
kuramoto
montbrio
oscillator
OscillatorT
OscillatorT.I
OscillatorT.a
OscillatorT.alpha
OscillatorT.b
OscillatorT.beta
OscillatorT.c
OscillatorT.cvar
OscillatorT.d
OscillatorT.dfun()
OscillatorT.e
OscillatorT.f
OscillatorT.g
OscillatorT.gamma
OscillatorT.state_variable_boundaries
OscillatorT.state_variable_range
OscillatorT.state_variables
OscillatorT.tau
OscillatorT.variables_of_interest
rwongwang
RwongwangT
RwongwangT.G
RwongwangT.I_0
RwongwangT.JI
RwongwangT.J_I
RwongwangT.J_N
RwongwangT.J_NMDA
RwongwangT.a_E
RwongwangT.a_I
RwongwangT.b_E
RwongwangT.b_I
RwongwangT.cvar
RwongwangT.d_E
RwongwangT.d_I
RwongwangT.dfun()
RwongwangT.gamma_E
RwongwangT.gamma_I
RwongwangT.lamda
RwongwangT.state_variable_boundaries
RwongwangT.state_variable_range
RwongwangT.state_variables
RwongwangT.tau_E
RwongwangT.tau_I
RwongwangT.variables_of_interest
RwongwangT.w_E
RwongwangT.w_I
RwongwangT.w_plus
- Subpackages
run
Packagemodel_driver
Driver_Execute
Driver_Execute.cf()
Driver_Execute.compare_with_ref()
Driver_Execute.gpu_mem_info()
Driver_Execute.make_gpu_data()
Driver_Execute.make_kernel()
Driver_Execute.nbytes()
Driver_Execute.plot_output()
Driver_Execute.release_gpumem()
Driver_Execute.run_all()
Driver_Execute.run_simulation()
Driver_Execute.set_CUDA_ref_model_dir()
Driver_Execute.set_CUDAmodel_dir()
Driver_Execute.write_output()
Driver_Setup
model_driver_bold
Driver_Execute
Driver_Execute.cf()
Driver_Execute.compare_with_ref()
Driver_Execute.gpu_mem_info()
Driver_Execute.make_gpu_data()
Driver_Execute.make_kernel()
Driver_Execute.nbytes()
Driver_Execute.plot_output()
Driver_Execute.release_gpumem()
Driver_Execute.run_all()
Driver_Execute.run_simulation()
Driver_Execute.set_CUDA_ref_model_dir()
Driver_Execute.set_CUDAmodel_dir()
Driver_Execute.write_output()
Driver_Setup
model_driver_heun
model_driver_zerlaut
Driver_Execute
Driver_Execute.cf()
Driver_Execute.compare_with_ref()
Driver_Execute.gpu_mem_info()
Driver_Execute.make_gpu_data()
Driver_Execute.make_kernel()
Driver_Execute.nbytes()
Driver_Execute.plot_output()
Driver_Execute.release_gpumem()
Driver_Execute.run_all()
Driver_Execute.run_simulation()
Driver_Execute.set_CUDA_ref_model_dir()
Driver_Execute.set_CUDAmodel_dir()
Driver_Execute.write_output()
Driver_Setup
regular_run