Source code for tvb.config.profile_settings
# -*- coding: utf-8 -*-
#
#
# TheVirtualBrain-Framework Package. This package holds all Data Management, and
# Web-UI helpful to run brain-simulations. To use it, you also need to download
# TheVirtualBrain-Scientific Package (for simulators). See content of the
# documentation-folder for more details. See also http://www.thevirtualbrain.org
#
# (c) 2012-2023, Baycrest Centre for Geriatric Care ("Baycrest") and others
#
# This program is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software Foundation,
# either version 3 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE. See the GNU General Public License for more details.
# You should have received a copy of the GNU General Public License along with this
# program. If not, see <http://www.gnu.org/licenses/>.
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# CITATION:
# When using The Virtual Brain for scientific publications, please cite it as explained here:
# https://www.thevirtualbrain.org/tvb/zwei/neuroscience-publications
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"""
TVB global configurations are predefined/read from here, for working with Framework.
.. moduleauthor:: Lia Domide <lia.domide@codemart.ro>
"""
import os
import sys
import tvb.config.init
from tvb.basic.config import stored
from tvb.basic.config.profile_settings import BaseSettingsProfile
from tvb.basic.config.settings import DBSettings
from tvb.basic.logger import builder
from tvb.basic.logger.builder import LoggerBuilder
from tvb.config.init.datatypes_registry import populate_datatypes_registry
[docs]class WebSettingsProfile(BaseSettingsProfile):
"""
Setting for working with storage and web interface
"""
LOGGER_CONFIG_FILE_NAME = "logger_config.conf"
[docs] def initialize_profile(self, change_logger_in_dev=True):
"""
Specific initialization when functioning with storage
"""
super(WebSettingsProfile, self).initialize_profile()
if change_logger_in_dev and not self.env.is_distribution():
self.LOGGER_CONFIG_FILE_NAME = "dev_logger_config.conf"
populate_datatypes_registry()
builder.GLOBAL_LOGGER_BUILDER = LoggerBuilder('tvb.config.logger')
[docs] def initialize_for_deployment(self):
"""
Specific initialization for deployment and framework settings
"""
super(WebSettingsProfile, self).initialize_for_deployment()
inside_static_folder = os.path.dirname(os.path.dirname(os.path.dirname(
os.path.abspath(tvb.config.init.__file__))))
self.web.CHERRYPY_CONFIGURATION['/statichelp']['tools.staticdir.root'] = inside_static_folder
# We want to disable warnings we get from sqlalchemy for traited attributes when we are in deployment mode.
import warnings
from sqlalchemy import exc as sa_exc
warnings.simplefilter("ignore", category=sa_exc.SAWarning)
[docs]class CommandSettingsProfile(WebSettingsProfile):
"""
Profile which allows you to work in tvb with storage enable, but in console mode.
"""
[docs]class TestSQLiteProfile(WebSettingsProfile):
"""
Defines settings for running tests on an SQLite database.
"""
# Use a different configuration file, to make it possible to run multiple instances in the same time
TVB_CONFIG_FILE = os.path.expanduser(os.path.join("~", '.test.tvb.configuration'))
DEFAULT_STORAGE = os.path.expanduser(os.path.join('~', 'TVB_TEST'))
REVISION_NUMBER = 1
CODE_CHECKED_TO_VERSION = sys.maxsize
TRADE_CRASH_SAFETY_FOR_SPEED = True
def __init__(self):
super(TestSQLiteProfile, self).__init__()
self.web.RENDER_HTML = False
# NOTE: overwriting MAX_THREADS_NUMBER won't work in a test profile, as it needs a restart
# self.MAX_THREADS_NUMBER = self.manager.get_attribute(stored.KEY_MAX_THREAD_NR, 2, int)
self.TVB_STORAGE = self.manager.get_attribute(stored.KEY_STORAGE, self.DEFAULT_STORAGE, str)
# For tests we will place logs in workspace (current folder), to have them visible from Hudson.
self.TVB_LOG_FOLDER = "TEST_OUTPUT"
self.TVB_TEMP_FOLDER = os.path.join(self.TVB_STORAGE, "TEMP")
self.db = DBSettings(self.manager, self.DEFAULT_STORAGE, self.TVB_STORAGE)
self.db.DB_URL = 'sqlite:///' + os.path.join(self.TVB_STORAGE, "tvb-database.db")
self.db.SELECTED_DB = 'sqlite'
self.hpc.CRYPT_DATADIR = self.manager.get_attribute(stored.KEY_CRYPT_DATADIR,
os.path.join(self.TVB_STORAGE, '.data'))
self.hpc.CRYPT_PASSDIR = self.manager.get_attribute(stored.KEY_CRYPT_PASSDIR,
os.path.join(self.TVB_STORAGE, '.pass'))
self.file_storage = self.manager.get_attribute(stored.KEY_FILE_STORAGE, 'h5')
[docs] def initialize_profile(self, change_logger_in_dev=False):
super(TestSQLiteProfile, self).initialize_profile(change_logger_in_dev=change_logger_in_dev)
[docs] def initialize_for_deployment(self):
"""
This profile will not be used in deployment, so we try to avoid problems due to too much initialization
"""
pass
[docs]class TestPostgresProfile(TestSQLiteProfile):
"""
Defines settings for running tests on a Postgres database.
"""
def __init__(self):
super(TestPostgresProfile, self).__init__()
# Used DB url: IP,PORT. The DB needs to be created in advance.
self.db.DB_URL = 'postgresql+psycopg2://postgres:root@127.0.0.1:5432/tvb-test?user=postgres&password=postgres'
self.db.SELECTED_DB = 'postgres'