Source code for tvb.adapters.visualizers.connectivity_edge_bundle

# -*- coding: utf-8 -*-
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"""
A Javascript displayer for connectivity, using hierarchical edge bundle diagrams from d3.js.

.. moduleauthor:: Vlad Farcas <vlad.farcas@codemart.ro>

"""

import json
from tvb.adapters.datatypes.db.connectivity import ConnectivityIndex
from tvb.core.adapters.abcadapter import ABCAdapterForm
from tvb.core.adapters.abcdisplayer import ABCDisplayer, URLGenerator
from tvb.core.neotraits.forms import TraitDataTypeSelectField
from tvb.core.neotraits.view_model import ViewModel, DataTypeGidAttr
from tvb.core.utils import TVBJSONEncoder
from tvb.datatypes.connectivity import Connectivity



[docs]
class ConnectivityEdgeBundleModel(ViewModel):
    connectivity = DataTypeGidAttr(
        linked_datatype=Connectivity,
        label="Connectivity to be displayed in a hierarchical edge bundle"
    )




[docs]
class ConnectivityEdgeBundleForm(ABCAdapterForm):

    def __init__(self):
        super(ConnectivityEdgeBundleForm, self).__init__()
        self.connectivity = TraitDataTypeSelectField(ConnectivityEdgeBundleModel.connectivity, name="connectivity",
                                                     conditions=self.get_filters(), has_all_option=False)


[docs]
    @staticmethod
    def get_required_datatype():
        return ConnectivityIndex



[docs]
    @staticmethod
    def get_input_name():
        return 'connectivity'



[docs]
    @staticmethod
    def get_filters():
        return None



[docs]
    @staticmethod
    def get_view_model():
        return ConnectivityEdgeBundleModel





[docs]
class ConnectivityEdgeBundle(ABCDisplayer):
    _ui_name = "Connectivity Edge Bundle View"
    _ui_subsection = "connectivity_edge"


[docs]
    def get_form_class(self):
        return ConnectivityEdgeBundleForm



[docs]
    def get_required_memory_size(self, **kwargs):
        """Return required memory."""
        return -1



[docs]
    def launch(self, view_model):
        """Construct data for visualization and launch it."""

        connectivity = self.load_traited_by_gid(view_model.connectivity)

        pars = {"labels": json.dumps(connectivity.region_labels.tolist(), cls=TVBJSONEncoder),
                "url_base": URLGenerator.paths2url(view_model.connectivity,
                                                   attribute_name="weights", flatten="True")
                }

        return self.build_display_result("connectivity_edge_bundle/view", pars)