Index

_

__call__() (tvb.simulator.coupling.PreSigmoidal method)

__init__() (tvb.simulator.models.epileptor.Epileptor method) (tvb.simulator.models.hopfield.Hopfield method) (tvb.simulator.models.jansen_rit.JansenRit method) (tvb.simulator.models.larter_breakspear.LarterBreakspear method) (tvb.simulator.models.oscillator.Generic2dOscillator method) (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo method) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose method) (tvb.simulator.models.wilson_cowan.WilsonCowan method) (tvb.simulator.models.wong_wang.ReducedWongWang method) (tvb.simulator.noise.Noise method)

A

ABCAdapter (class in tvb.core.adapters.abcadapter) ABCAsynchronous (class in tvb.core.adapters.abcadapter) ABCDisplayer (class in tvb.core.adapters.abcdisplayer) ABCExporter (class in tvb.adapters.exporters.abcexporter) ABCRemover (class in tvb.core.adapters.abcremover) ABCSynchronous (class in tvb.core.adapters.abcadapter) ABCUploader (class in tvb.adapters.uploaders.abcuploader) accepted__aggregation_functions() (tvb.interfaces.web.controllers.flow_controller.FlowController static method) accepts() (tvb.adapters.exporters.abcexporter.ABCExporter method) ACCESS_MODE_TVB_FILES (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) AdapterConfiguration (class in tvb.core.entities.transient.burst_configuration_entities) add2session() (in module tvb.interfaces.web.controllers.common) add_adapter_to_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) add_child() (tvb.datatypes.annotations.AnnotationTerm method) add_condition() (tvb.basic.filters.chain.FilterChain method) add_entries_to_config_file() (tvb.basic.config.stored.SettingsManager method) add_interface_to_session() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) add_members_to_project() (tvb.core.entities.storage.project_dao.CaseDAO method) add_operation_additional_info() (tvb.core.adapters.abcadapter.ABCAdapter method) add_portlet_to_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) add_scientific_fields() (tvb.core.entities.transient.context_overlay.CommonDetails method) add_session() (in module tvb.core.entities.storage.session_maker) add_to_path() (tvb.adapters.analyzers.matlab_worker.MatlabWorker method) add_view_step() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method) add_warning() (tvb.datatypes.surfaces.ValidationResult method) add_workflow() (tvb.core.entities.transient.burst_export_entities.BurstInformation method) add_workflow_step() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method) Additive (in module tvb.simulator.noise) adjacencies (tvb.core.entities.transient.graph_structures.NodeStructure attribute) ADMINISTRATOR_BLANK_PWD (tvb.basic.config.settings.WebAdminSettings attribute) algo_identifier (tvb.core.portlets.portlet_configurer.PortletConfigurer attribute) ALGO_INFO (tvb.core.entities.transient.burst_export_entities.StepInfo attribute) Algorithm (in module tvb.core.entities.model.model_operation) algorithm (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute) (tvb.basic.filters.chain.FilterChain attribute) algorithm_category (tvb.basic.filters.chain.FilterChain attribute) algorithm_category_replacement (tvb.basic.filters.chain.FilterChain attribute) algorithm_replacement (tvb.basic.filters.chain.FilterChain attribute) AlgorithmCategory (in module tvb.core.entities.model.model_operation) AlgorithmTransientGroup (class in tvb.core.entities.model.model_operation)

ALL (tvb.basic.profile.TvbProfile attribute) all_exporters (tvb.adapters.exporters.export_manager.ExportManager attribute) ALLEN_MOUSE_CONNECTIVITY_CACHE_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute) AllenConnectomeBuilder (class in tvb.adapters.creators.allen_creator) ALLOW_NESTED_TRANSACTIONS (tvb.basic.config.settings.DBSettings attribute) Alpha (in module tvb.datatypes.equations) ANALYZE_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) ANALYZERS_ONLINE_HELP_SHORTCUTS (tvb.interfaces.web.structure.WebStructure attribute) AnnotationArray (in module tvb.datatypes.annotations) AnnotationTerm (class in tvb.datatypes.annotations) append_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) append_required_defaults() (tvb.core.adapters.input_tree.InputTreeManager method) (tvb.core.adapters.input_tree2.InputTreeManager method) append_to_path() (tvb.basic.config.environment.Environment method) apply_equation() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) apply_focal_point() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) AREA_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) areas_volume_threshold() (in module tvb.adapters.creators.allen_creator) Args (class in tvb.basic.traits.util) Array (in module tvb.basic.traits.types_mapped_light) (in module tvb.core.traits.types_mapped) array (tvb.simulator.descriptors.NDArray.State attribute) array_size2kb() (tvb.core.adapters.abcadapter.ABCAsynchronous method) ArrayNode (class in tvb.basic.traits.itree_model) AsciiValidator (class in tvb.interfaces.web.controllers.settings_controller) ASP_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) astr() (in module tvb.simulator.common) ATT_UID (tvb.core.services.operation_service.OperationService attribute) attach_db_events() (in module tvb.core.traits.db_events) ATTR_ONTOLOGY_DEFINITION (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_LABEL (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_RELATION (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_SYN (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_ONTOLOGY_URI (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_TVB_ID (tvb.adapters.uploaders.brco.parser.XMLParser attribute) ATTR_TVB_LABEL (tvb.adapters.uploaders.brco.parser.XMLParser attribute) available_algorithms (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter attribute) available_couplings (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute) available_integrators (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute) available_models (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute) available_monitors (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute)

B

BalloonModel (in module tvb.analyzers.fmri_balloon) BalloonModelAdapter (class in tvb.adapters.analyzers.fmri_balloon_adapter) BASE_VERSION (tvb.basic.config.settings.VersionSettings attribute) BaseArray (in module tvb.datatypes.arrays) BaseBCT (class in tvb.adapters.analyzers.bct_adapters) BaseController (class in tvb.interfaces.web.controllers.base_controller) BaseExportHelp (class in tvb.core.entities.transient.burst_export_entities) BaseHistory (class in tvb.simulator.history) BaseSettingsProfile (class in tvb.basic.config.profile_settings) BaseStorageException BaseTimeseriesMetricAlgorithm (in module tvb.analyzers.metrics_base) BaseUndirected (class in tvb.adapters.analyzers.bct_adapters) bct_description() (in module tvb.adapters.analyzers.bct_adapters) Bench (class in tvb.interfaces.command.benchmark) betweenness_bin() (in module tvb.analyzers.graph) BIN_FOLDER (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) Bold (in module tvb.simulator.monitors) BoldRegionROI (in module tvb.simulator.monitors) Bool (in module tvb.basic.traits.types_basic) BOOL_VALUE_PREFIX (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute) BoolArray (in module tvb.datatypes.arrays) BrainSkull (in module tvb.datatypes.surfaces) BrainstormGainMatrixImporter (class in tvb.adapters.uploaders.projection_matrix_importer) BrainstormSensorUploader (class in tvb.adapters.uploaders.sensors_importer) BrainViewer (class in tvb.adapters.visualizers.brain) BRCOImporter (class in tvb.adapters.uploaders.brco_importer) Buffer (class in tvb.simulator.common) buffer (tvb.simulator.history.DenseHistory attribute) BUFFER_CAPACITY (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute) buffer_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager.H5pyStorageBuffer method)

build_adapter() (tvb.core.adapters.abcadapter.ABCAdapter static method) build_adapter_from_class() (tvb.core.adapters.abcadapter.ABCAdapter static method) build_adapter_from_declaration() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method) build_artificial_root_structure() (tvb.core.entities.transient.graph_structures.NodeStructure static method) build_connectivity_measure() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) build_datatype_filters() (tvb.core.entities.transient.filtering.StaticFiltersFactory static method) build_display_result() (tvb.core.adapters.abcdisplayer.ABCDisplayer method) build_float_value_wrapper() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) build_int_value_wrapper() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) build_logger() (tvb.basic.logger.builder.LoggerBuilder method) build_node_for_datatype() (tvb.core.entities.transient.graph_structures.NodeData static method) build_node_for_operation() (tvb.core.entities.transient.graph_structures.NodeData static method) build_node_info() (tvb.core.entities.transient.pse.ContextDiscretePSE method) build_noise() (in module tvb.datatypes.noise_framework) build_operations_filters() (tvb.core.entities.transient.filtering.StaticFiltersFactory static method) build_portlet_interface() (tvb.core.services.burst_service.BurstService method) build_projection_instance() (in module tvb.adapters.uploaders.projection_matrix_importer) build_structure_for_datatype() (tvb.core.entities.transient.graph_structures.NodeStructure static method) build_structure_for_operation() (tvb.core.entities.transient.graph_structures.NodeStructure static method) build_structure_for_operation_group() (tvb.core.entities.transient.graph_structures.NodeStructure static method) build_template_params_for_subselectable_datatype() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) BURST_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) burst_preview() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) BurstBaseController (class in tvb.interfaces.web.controllers.burst.base_controller) BurstConfiguration (in module tvb.core.entities.model.model_burst) BurstController (class in tvb.interfaces.web.controllers.burst.burst_controller) BurstInformation (class in tvb.core.entities.transient.burst_export_entities) BurstNameForm (class in tvb.interfaces.web.controllers.burst.burst_controller) BurstService (class in tvb.core.services.burst_service) BurstServiceException

C

cached_simulator_input_tree (tvb.interfaces.web.controllers.burst.burst_controller.BurstController attribute) can_be_active() (tvb.adapters.analyzers.bct_adapters.BaseBCT static method) (tvb.core.adapters.abcadapter.ABCAdapter static method) cancel_or_remove_burst() (tvb.core.services.burst_service.BurstService method) (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) CaseDAO (class in tvb.core.entities.storage.project_dao) center_vertices() (in module tvb.datatypes.surfaces) CentralityEdgeBinary (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityEdgeWeighted (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityEigenVector (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityKCoreness (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityKCorenessBD (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityNodeBinary (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityNodeWeighted (class in tvb.adapters.analyzers.bct_centrality_adapters) CentralityShortcuts (class in tvb.adapters.analyzers.bct_centrality_adapters) CENTRES_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) CENTRES_TOKEN2 (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) CFF_Importer (class in tvb.adapters.uploaders.cff_importer) chained_validators (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute) (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) change_algorithm() (in module tvb.core.entities.model.db_update_scripts.helper) change_selected_tab() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) check_admin() (in module tvb.interfaces.web.controllers.decorators) check_created() (tvb.core.entities.file.files_helper.FilesHelper method) check_db_url() (tvb.core.services.settings_service.SettingsService method) (tvb.interfaces.web.controllers.settings_controller.SettingsController method) check_login() (tvb.core.services.user_service.UserService static method) check_status_for_visualizer() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) check_upload_size() (tvb.interfaces.web.request_handler.RequestHandler static method) check_user() (in module tvb.interfaces.web.controllers.decorators) chunk_iter() (in module tvb.adapters.uploaders.tract_importer) CLASS_NAME (tvb.datatype_removers.remover_region_mapping.RegionMappingRemover attribute) (tvb.datatype_removers.remover_region_mapping.RegionVolumeMappingRemover attribute) clean_files_on_disk() (tvb.interfaces.web.request_handler.RequestHandler static method) clean_from_session() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) cleanup() (tvb.adapters.analyzers.matlab_worker.MatlabWorker method) cleanup_metapath() (in module tvb.basic.profile) clear_data_for_portlet() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method) clone() (tvb.core.entities.model.model_burst.TabConfiguration method) (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration method) close_file() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) close_session() (tvb.core.entities.storage.session_maker.SessionsStack method) close_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method) CLUSTER_NODE_NAME (tvb.basic.config.settings.ClusterSettings attribute) CLUSTER_NODES_LOG_FILE (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute) ClusteringCoefficient (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusteringCoefficientBU (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusteringCoefficientWD (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusteringCoefficientWU (class in tvb.adapters.analyzers.bct_clustering_adapters) ClusterSchedulerClient (class in tvb.core.services.backend_client) ClusterSettings (class in tvb.basic.config.settings) ClusterTimedRotatingFileHandler (class in tvb.config.logger.cluster_handler) CODE_CHECKED_TO_VERSION (tvb.config.profile_settings.TestSQLiteProfile attribute) CODE_GID (tvb.core.entities.transient.context_overlay.CommonDetails attribute) CODE_OPERATION_GROUP_ID (tvb.core.entities.transient.context_overlay.CommonDetails attribute) CODE_OPERATION_GROUP_NAME (tvb.core.entities.transient.context_overlay.CommonDetails attribute) CODE_OPERATION_TAG (tvb.core.entities.transient.context_overlay.CommonDetails attribute) CodeUpdateManager (class in tvb.core.code_versions.code_update_manager) coherence() (in module tvb.analyzers.node_coherence) coherence_mlab() (in module tvb.analyzers.node_coherence) CoherenceSpectrum (in module tvb.datatypes.spectral) col (tvb.interfaces.command.benchmark.Bench attribute) collapse_params() (in module tvb.basic.traits.parameters_factory) color_texture_to_list() (in module tvb.core.services.texture_to_json) coloured() (tvb.simulator.noise.Noise method) COLW (tvb.interfaces.command.benchmark.Bench attribute) COMMAND_PROFILE (tvb.basic.profile.TvbProfile attribute) CommandSettingsProfile (class in tvb.config.profile_settings) CommonDetails (class in tvb.core.entities.transient.context_overlay) Complex (in module tvb.basic.traits.types_basic) ComplexArray (in module tvb.datatypes.arrays) ComplexCoherenceSpectrum (in module tvb.datatypes.spectral) ComplexDtypeNode (class in tvb.basic.traits.itree_model) compute_2d_view() (in module tvb.adapters.visualizers.matrix_viewer) compute_bursts_disk_size() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) compute_connectivity_global_params() (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) compute_data_for_gradient_view() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) compute_disk_size_for_started_ops() (tvb.core.entities.storage.operation_dao.OperationDAO method) compute_operation_name() (tvb.core.entities.transient.context_overlay.CommonDetails static method) compute_parameters() (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method) (tvb.adapters.visualizers.connectivity.Connectivity3DViewer static method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) compute_params() (tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin method) compute_phase_plane() (tvb.adapters.visualizers.phase_plane_interactive.PhaseLineD3 method) (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) compute_preview_parameters() (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method) compute_radii() (in module tvb.analyzers.fcd_matrix) compute_raw_matrix_params() (tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin static method) compute_required_info() (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) compute_size_on_disk() (tvb.core.entities.file.files_helper.FilesHelper static method)

compute_table_name() (in module tvb.core.traits.core) compute_topography_data() (tvb.adapters.visualizers.topographic.TopographyCalculations static method) compute_user_generated_disk_size() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) configure() (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.simulator.models.hopfield.Hopfield method) configure_simulator_parameters() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) configure_white() (tvb.simulator.noise.Noise method) Connectivity (in module tvb.datatypes.connectivity) Connectivity2DViewer (class in tvb.adapters.visualizers.connectivity) Connectivity3DViewer (class in tvb.adapters.visualizers.connectivity) CONNECTIVITY_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) ConnectivityAnnotations (in module tvb.datatypes.annotations) ConnectivityAnnotationsView (class in tvb.adapters.visualizers.annotations_viewer) ConnectivityCreator (class in tvb.adapters.creators.connectivity_creator) ConnectivityEdgeBundle (class in tvb.adapters.visualizers.connectivity_edge_bundle) ConnectivityMeasure (in module tvb.datatypes.graph) ConnectivityMeasureImporter (class in tvb.adapters.uploaders.connectivity_measure_importer) ConnectivityMeasureOnSurfaceViewer (class in tvb.adapters.visualizers.surface_view) ConnectivityMeasureVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping) ConnectivityRemover (class in tvb.datatype_removers.remover_connectivity) ConnectivityViewer (class in tvb.adapters.visualizers.connectivity) const_indices (tvb.simulator.history.SparseHistory attribute) construct_centres() (in module tvb.adapters.creators.allen_creator) construct_structural_conn() (in module tvb.adapters.creators.allen_creator) construct_tract_lengths() (in module tvb.adapters.creators.allen_creator) context_selected() (in module tvb.interfaces.web.controllers.decorators) ContextDiscretePSE (class in tvb.core.entities.transient.pse) ContextLocalConnectivity (class in tvb.core.entities.transient.context_local_connectivity) ContinuousWaveletTransform (in module tvb.analyzers.wavelet) ContinuousWaveletTransformAdapter (class in tvb.adapters.analyzers.wavelet_adapter) convert_brainstorm_to_tvb() (in module tvb.datatypes.sensors_bst_to_tvb) convert_ui_inputs() (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.adapters.input_tree.InputTreeManager method) (tvb.core.adapters.input_tree2.InputTreeManager method) copy() (tvb.basic.traits.core.TraitsInfo method) copy_burst() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) copy_file() (tvb.core.entities.file.files_helper.FilesHelper static method) copy_zip_entry_into_temp() (in module tvb.basic.readers) CorrelationCoefficient (in module tvb.analyzers.correlation_coefficient) CorrelationCoefficients (in module tvb.datatypes.graph) Cortex (in module tvb.datatypes.cortex) CORTICAL_INFO (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) CorticalSurface (in module tvb.datatypes.surfaces) Cosine (in module tvb.datatypes.equations) count_all_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_bursts_with_name() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) count_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_datatypes_generated_from() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) count_datatypes_in_burst() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_datatypes_in_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) count_filtered_operations() (tvb.core.services.project_service.ProjectService static method) count_projects_for_name() (tvb.core.entities.storage.project_dao.CaseDAO method) count_resulted_datatypes() (tvb.core.entities.storage.operation_dao.OperationDAO method) count_users_for_name() (tvb.core.entities.storage.project_dao.CaseDAO method) Coupling (in module tvb.simulator.coupling) Covariance (in module tvb.datatypes.graph) CovarianceVisualizer (class in tvb.adapters.visualizers.covariance) create_and_store_workflow() (tvb.core.services.workflow_service.WorkflowService static method) create_date (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) create_eeg_ts() (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method) create_file_order() (in module tvb.adapters.creators.allen_creator) create_json() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) create_link() (tvb.core.services.flow_service.FlowService static method) create_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) create_new() (tvb.interfaces.web.controllers.users_controller.UserController method) create_new_portlet_configuration() (tvb.core.portlets.portlet_configurer.PortletConfigurer method) create_region_ts() (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method) create_row_of_specs() (tvb.interfaces.web.controllers.flow_controller.FlowController method) create_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) create_user() (tvb.core.services.user_service.UserService method) createlink() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) CrossCoherenceVisualizer (class in tvb.adapters.visualizers.cross_coherence) CrossCorrelate (in module tvb.analyzers.cross_correlation) CrossCorrelateAdapter (class in tvb.adapters.analyzers.cross_correlation_adapter) CrossCorrelation (in module tvb.datatypes.temporal_correlations) CrossCorrelationVisualizer (class in tvb.adapters.visualizers.cross_correlation) CSVConnectivityImporter (class in tvb.adapters.uploaders.csv_connectivity_importer) CSVConnectivityParser (class in tvb.adapters.uploaders.csv_connectivity_importer) current (tvb.basic.profile.TvbProfile attribute) current_page (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) CURRENT_PROFILE_NAME (tvb.basic.profile.TvbProfile attribute) current_session (tvb.core.entities.storage.session_maker.SessionsStack attribute) current_state (tvb.simulator.history.DenseHistory attribute) cvars (tvb.simulator.history.BaseHistory attribute)

D

DAO (class in tvb.core.entities.storage) data (tvb.core.entities.transient.burst_export_entities.BaseExportHelp attribute) (tvb.core.entities.transient.graph_structures.NodeStructure attribute) DATA_STATE (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_SUBJECT (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_1 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_2 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_3 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_4 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TAG_5 (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TITLE (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails attribute) DATA_TYPES_PAGE_SIZE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) DATA_VERSION (tvb.basic.config.settings.VersionSettings attribute) DATA_VERSION_ATTRIBUTE (tvb.basic.config.settings.VersionSettings attribute) DataType (in module tvb.core.entities.model.model_datatype) datatype (tvb.basic.filters.chain.FilterChain attribute) datatype_details() (in module tvb.interfaces.command.lab) DATATYPE_INDEX_KEY (tvb.core.entities.transient.burst_configuration_entities.WorkflowStepConfiguration attribute) datatype_replacement (tvb.basic.filters.chain.FilterChain attribute) DatatypeDAO (class in tvb.core.entities.storage.datatype_dao) DataTypeGroup (in module tvb.core.entities.model.model_datatype) DatatypeMeasure (in module tvb.datatypes.mapped_values) DataTypeMetaData (class in tvb.core.entities.transient.structure_entities) DatatypeNode (class in tvb.basic.traits.itree_model) DataTypeOverlayDetails (class in tvb.core.entities.transient.context_overlay) date2string() (in module tvb.core.utils) DATE_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) DATE_TIME_FORMAT (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute) DATETIME_VALUE_PREFIX (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute) DB_STRUCTURE_VERSION (tvb.basic.config.settings.VersionSettings attribute) DBSettings (class in tvb.basic.config.settings) declarative_count (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute) (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.AsciiValidator attribute) (tvb.interfaces.web.controllers.settings_controller.DiskSpaceValidator attribute) (tvb.interfaces.web.controllers.settings_controller.MatlabValidator attribute) (tvb.interfaces.web.controllers.settings_controller.PortValidator attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.settings_controller.SurfaceVerticesNrValidator attribute) (tvb.interfaces.web.controllers.settings_controller.ThreadNrValidator attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) (tvb.interfaces.web.controllers.users_controller.UniqueUsername attribute) DeclarativeMetaType (class in tvb.core.traits.core) default() (tvb.core.utils.TVBJSONEncoder method) (tvb.interfaces.web.controllers.flow_controller.FlowController method) DEFAULT_ADMIN_EMAIL (tvb.basic.config.settings.WebAdminSettings attribute) DEFAULT_COLOR (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) DEFAULT_STORAGE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) (tvb.config.profile_settings.TestSQLiteProfile attribute) DEFAULT_SUBJECT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) Degree (class in tvb.adapters.analyzers.bct_degree_adapters) DegreeIOD (class in tvb.adapters.analyzers.bct_degree_adapters) delayed_state (tvb.simulator.history.DenseHistory attribute) delays (tvb.simulator.history.BaseHistory attribute) delete_members_for_project() (tvb.core.entities.storage.project_dao.CaseDAO method) delete_project() (tvb.core.entities.storage.project_dao.CaseDAO method) delete_user() (tvb.core.services.user_service.UserService method) DELIMITER_OPTIONS (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute)

DenseHistory (class in tvb.simulator.history) DensityDirected (class in tvb.adapters.analyzers.bct_degree_adapters) DensityUndirected (class in tvb.adapters.analyzers.bct_degree_adapters) DESCRIPTION_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) dfun() (tvb.simulator.models.oscillator.Generic2dOscillator method) Dict (in module tvb.basic.traits.types_basic) dictionary_builder() (in module tvb.adapters.creators.allen_creator) DictNode (class in tvb.basic.traits.itree_model) Difference (in module tvb.simulator.coupling) Dim (class in tvb.simulator.descriptors) DiscreteEquation (in module tvb.datatypes.equations) DiscretePSEAdapter (class in tvb.adapters.visualizers.pse_discrete) DiskSpaceValidator (class in tvb.interfaces.web.controllers.settings_controller) display_connectivity() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController static method) display_surface() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) displayresultfigures() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) displayzoomedimage() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) distance_inv() (in module tvb.analyzers.graph) DistanceDBIN (class in tvb.adapters.analyzers.bct_adapters) DistanceDWEI (class in tvb.adapters.analyzers.bct_adapters) DistanceNETW (class in tvb.adapters.analyzers.bct_adapters) DistanceRDA (class in tvb.adapters.analyzers.bct_adapters) DistanceRDM (class in tvb.adapters.analyzers.bct_adapters) do_operation_launch() (in module tvb.core.operation_async_launcher) do_step() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) Dop853 (in module tvb.simulator.integrators) Dop853Stochastic (in module tvb.simulator.integrators) Dopri5 (in module tvb.simulator.integrators) Dopri5Stochastic (in module tvb.simulator.integrators) DoubleExponential (in module tvb.datatypes.equations) DoubleGaussian (in module tvb.datatypes.equations) downgrade() (in module tvb.core.entities.model.db_update_scripts.001_update_db) (in module tvb.core.entities.model.db_update_scripts.002_update_db) (in module tvb.core.entities.model.db_update_scripts.003_update_db) (in module tvb.core.entities.model.db_update_scripts.004_update_db) (in module tvb.core.entities.model.db_update_scripts.005_update_db) (in module tvb.core.entities.model.db_update_scripts.006_update_db) (in module tvb.core.entities.model.db_update_scripts.007_update_db) (in module tvb.core.entities.model.db_update_scripts.008_update_db) (in module tvb.core.entities.model.db_update_scripts.009_update_db) (in module tvb.core.entities.model.db_update_scripts.010_update_db) (in module tvb.core.entities.model.db_update_scripts.011_update_db) (in module tvb.core.entities.model.db_update_scripts.012_update_db) (in module tvb.core.entities.model.db_update_scripts.013_update_db) (in module tvb.core.entities.model.db_update_scripts.014_update_db) (in module tvb.core.entities.model.db_update_scripts.015_update_db) (in module tvb.core.entities.model.db_update_scripts.016_update_db) (in module tvb.core.entities.model.db_update_scripts.017_update_db) download_an_construct_matrix() (in module tvb.adapters.creators.allen_creator) downloaddata() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) downloadimage() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) downloadproject() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) draw_discrete_exploration() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) draw_isocline_exploration() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) DType (in module tvb.basic.traits.types_basic) dtype (tvb.simulator.descriptors.NDArray attribute) DualBrainViewer (class in tvb.adapters.visualizers.brain) dump_with_precision() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) Dynamic (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller) (in module tvb.core.entities.model.model_burst) dynamic_detail() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) DynamicModelController (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller)

E

edit_model_parameters() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) edit_result_figure() (tvb.core.services.figure_service.FigureService method) edit_user() (tvb.core.services.user_service.UserService method) EditForm (class in tvb.interfaces.web.controllers.project.project_controller) editone() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) EditPreview (class in tvb.interfaces.web.controllers.project.figure_controller) editresultfigures() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) editstructure() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) EditUserForm (class in tvb.interfaces.web.controllers.users_controller) EEG (in module tvb.simulator.monitors) EEG_SENSORS (tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute) EEGCap (in module tvb.datatypes.surfaces) EEGLAB (class in tvb.adapters.uploaders.signals_importer) EegMonitor (class in tvb.adapters.visualizers.eeg_monitor) efficiency_bin() (in module tvb.analyzers.graph) ELEM_ROOT (tvb.core.entities.file.xml_metadata_handlers.XMLWriter attribute) empty_msg (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) ENABLED (tvb.basic.config.settings.WebSettings attribute) EnhancedDictionary (class in tvb.basic.config.utils) ensure_db() (tvb.adapters.uploaders.abcuploader.ABCUploader method) Enumerate (in module tvb.basic.traits.types_basic) EnumerateNode (class in tvb.basic.traits.itree_model) env (tvb.basic.profile.TvbProfile attribute) Environment (class in tvb.basic.config.environment) Epileptor (in module tvb.simulator.models.epileptor) Epileptor2D (in module tvb.simulator.models.epileptor) epochs_interval() (in module tvb.analyzers.fcd_matrix) Equation (in module tvb.datatypes.equations)

EquationDisplayer (in module tvb.interfaces.web.entities.context_model_parameters) error() (tvb.interfaces.web.controllers.base_controller.BaseController method) es_icvar (tvb.simulator.history.DenseHistory attribute) es_idelays (tvb.simulator.history.DenseHistory attribute) es_node_ids (tvb.simulator.history.DenseHistory attribute) es_weights (tvb.simulator.history.DenseHistory attribute) EulerDeterministic (in module tvb.simulator.integrators) EulerStochastic (in module tvb.simulator.integrators) EXCEPTION_DATATYPE_GROUP (tvb.core.entities.storage.root_dao.RootDAO attribute) EXCEPTION_DATATYPE_SIMULATION (tvb.core.entities.storage.root_dao.RootDAO attribute) execute() (tvb.core.services.backend_client.ClusterSchedulerClient static method) (tvb.core.services.backend_client.StandAloneClient static method) execute_matlab() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) execute_post() (tvb.interfaces.web.controllers.flow_controller.FlowController method) expire_session() (in module tvb.interfaces.web.controllers.common) export() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.obj_export.ObjSurfaceExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) export_burst() (tvb.adapters.exporters.export_manager.ExportManager method) export_data() (tvb.adapters.exporters.export_manager.ExportManager method) export_folder (tvb.adapters.exporters.export_manager.ExportManager attribute) EXPORT_FOLDER_NAME (tvb.adapters.exporters.export_manager.ExportManager attribute) export_project() (tvb.adapters.exporters.export_manager.ExportManager method) Exportable (class in tvb.core.entities.exportable) ExportException ExportManager (class in tvb.adapters.exporters.export_manager) expose_fragment() (in module tvb.interfaces.web.controllers.decorators) expose_json() (in module tvb.interfaces.web.controllers.decorators) expose_numpy_array() (in module tvb.interfaces.web.controllers.decorators) expose_page() (in module tvb.interfaces.web.controllers.decorators) extract_matlab_doc_string() (in module tvb.core.utils)

F

FaceSurface (in module tvb.datatypes.surfaces) fastICA (in module tvb.analyzers.ica) Fcd (in module tvb.datatypes.fcd) FcdCalculator (in module tvb.analyzers.fcd_matrix) FFT (in module tvb.analyzers.fft) FIELD_NAME (tvb.datatype_removers.remover_region_mapping.RegionMappingRemover attribute) (tvb.datatype_removers.remover_region_mapping.RegionVolumeMappingRemover attribute) fields (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute) (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) FieldTripUploader (class in tvb.adapters.uploaders.fieldtrip_importer) (class in tvb.adapters.uploaders.signals_importer) FigureController (class in tvb.interfaces.web.controllers.project.figure_controller) FigureService (class in tvb.core.services.figure_service) FILE_EXTENSION (tvb.core.entities.file.xml_metadata_handlers.XMLWriter attribute) file_name (tvb.core.entities.transient.structure_entities.GenericMetaData attribute) file_storage (tvb.basic.traits.core.TraitsInfo attribute) FileReader (class in tvb.basic.readers) FilesHelper (class in tvb.core.entities.file.files_helper) FileStorageException FileStructureException FilesUpdateManager (class in tvb.core.entities.file.files_update_manager) FileVersioningException fill_all_graph_adjiacences() (tvb.core.entities.transient.graph_structures.FullGraphStructure method) fill_before_insert() (in module tvb.core.traits.db_events) fill_default_attributes() (tvb.interfaces.web.controllers.base_controller.BaseController method) (tvb.interfaces.web.controllers.burst.base_controller.BurstBaseController method) (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) (tvb.interfaces.web.controllers.flow_controller.FlowController method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) (tvb.interfaces.web.controllers.users_controller.UserController method) fill_defaults() (tvb.core.adapters.input_tree.InputTreeManager static method) (tvb.core.adapters.input_tree2.InputTreeManager static method) fill_from_datatype() (tvb.core.entities.transient.context_overlay.DataTypeOverlayDetails method) fill_input_tree_with_options() (tvb.core.adapters.input_tree.InputTreeManager method) (tvb.core.adapters.input_tree2.InputTreeManager method) fill_object() (tvb.core.entities.transient.pse.ContextDiscretePSE method) fill_overlay_attributes() (tvb.interfaces.web.controllers.base_controller.BaseController method) fill_shape_size() (tvb.core.entities.transient.graph_structures.FullGraphStructure method) filter_category() (tvb.core.entities.storage.operation_dao.OperationDAO method) FilterChain (class in tvb.basic.filters.chain) Final (class in tvb.simulator.descriptors)

Final.State (class in tvb.simulator.descriptors) find_module() (tvb.basic.config.utils.LibraryModulesFinder method) find_project() (tvb.core.services.project_service.ProjectService method) find_relative_path() (tvb.core.entities.file.files_helper.FilesHelper static method) FiniteSupportEquation (in module tvb.datatypes.equations) fire_operation() (tvb.core.services.flow_service.FlowService method) fire_simulation() (in module tvb.interfaces.command.lab) FIRST_RUN_STORAGE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) FirstOrderVolterra (in module tvb.datatypes.equations) flaten_input_interface() (tvb.core.adapters.abcadapter.ABCAdapter method) flatten() (tvb.core.adapters.input_tree.InputTreeManager method) (tvb.core.adapters.input_tree2.InputTreeManager method) Float (in module tvb.basic.traits.types_basic) FloatArray (in module tvb.datatypes.arrays) FlowCoefficients (class in tvb.adapters.analyzers.bct_centrality_adapters) FlowController (class in tvb.interfaces.web.controllers.flow_controller) FlowService (class in tvb.core.services.flow_service) flush_buffered_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager.H5pyStorageBuffer method) FooDataImporter (class in tvb.interfaces.command.demos.importers.new_importer) form_prefix() (tvb.core.adapters.input_tree.InputTreeManager static method) (tvb.core.adapters.input_tree2.InputTreeManager static method) format_bytes_human() (in module tvb.core.utils) format_timedelta() (in module tvb.core.utils) FourierAdapter (class in tvb.adapters.analyzers.fourier_adapter) FourierSpectrum (in module tvb.datatypes.spectral) FourierSpectrumDisplay (class in tvb.adapters.visualizers.fourier_spectrum) from_db() (tvb.adapters.visualizers.pse_isocline.PseIsoModel class method) from_dict() (tvb.core.entities.exportable.Exportable method) from_json() (tvb.basic.filters.chain.FilterChain class method) FS (tvb.interfaces.command.benchmark.Bench attribute) FULL_VIEW (tvb.core.entities.transient.filtering.StaticFiltersFactory attribute) FullGraphStructure (class in tvb.core.entities.transient.graph_structures) FunctionalConnectivityDynamicsAdapter (class in tvb.adapters.analyzers.fcd_adapter)

G

Gamma (in module tvb.datatypes.equations) Gaussian (in module tvb.datatypes.equations) GeneralizedSigmoid (in module tvb.datatypes.equations) generate() (tvb.simulator.noise.Noise method) generate_call_out_control() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) generate_guid() (in module tvb.core.utils) generate_preview() (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method) (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method) (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin method) (tvb.adapters.visualizers.pca.PCA method) (tvb.adapters.visualizers.time_series.TimeSeries method) (tvb.adapters.visualizers.topographic.TopographicViewer method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method) (tvb.core.adapters.abcdisplayer.ABCDisplayer method) Generic2dOscillator (in module tvb.simulator.models.oscillator) GenericMetaData (class in tvb.core.entities.transient.structure_entities) get() (in module tvb.basic.traits.util) get_adapter_template() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_adapters_chain() (tvb.core.portlets.xml_reader.XMLPortletReader method) get_adapters_from_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_administrators() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) get_algorithm() (tvb.core.entities.transient.burst_export_entities.StepInfo method) get_algorithm_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_algorithm_by_identifier() (tvb.core.services.flow_service.FlowService static method) get_algorithm_by_module() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_algorithm_by_module_and_class() (tvb.core.services.flow_service.FlowService static method) get_algorithm_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_algorithms_dictionary() (tvb.core.portlets.xml_reader.XMLPortletReader method) get_all_datatypes() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_all_datatypes_in_burst() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_all_operations_for_uploaders() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_all_projects() (tvb.core.entities.storage.project_dao.CaseDAO method) get_all_users() (tvb.core.entities.storage.project_dao.CaseDAO method) get_allen_mouse_cache_folder() (tvb.core.entities.file.files_helper.FilesHelper method) get_analyze_groups() (tvb.core.services.flow_service.FlowService method) get_applicable_adapters() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_attribute() (tvb.basic.config.stored.SettingsManager method) get_available_bursts() (tvb.core.services.burst_service.BurstService static method) get_available_datatypes() (tvb.core.services.flow_service.FlowService static method) get_available_portlets() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) (tvb.core.services.burst_service.BurstService static method) get_available_selections() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_burst_by_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_burst_for_operation_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_bursts_for_project() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_cached_dynamic() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) get_category_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.flow_service.FlowService method) get_class_by_name() (in module tvb.core.entities.load) get_color() (in module tvb.simulator.plot.phase_plane_interactive) get_color_schemes_json() (tvb.interfaces.web.controllers.users_controller.UserController method) get_components_sizes() (in module tvb.analyzers.graph) get_configurable_interface() (tvb.core.portlets.portlet_configurer.PortletConfigurer method) get_configure_info() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_configured_portlets() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_configured_portlets_for_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_connectivity() (tvb.core.services.burst_config_serialization.SerializationManager method) get_connectivity_parameters() (tvb.adapters.visualizers.connectivity.ConnectivityViewer static method) get_creator_and_interface() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) get_current_default() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) get_current_input_tree() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) get_current_project() (in module tvb.interfaces.web.controllers.common) get_current_step() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) get_current_substep() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) get_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) get_data_for_model_param() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_data_from_burst_configuration() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) get_data_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_data_shape() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) get_data_uploader_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_datatype_and_datatypegroup_inputs_for_operation() (tvb.core.services.project_service.ProjectService method) get_datatype_by_gid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_by_id() (tvb.core.entities.storage.root_dao.RootDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatype_details() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_datatype_group_by_gid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_group_disk_size() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatype_in_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatypegroup_by_gid() (tvb.core.services.project_service.ProjectService static method) get_datatypegroup_by_op_group_id() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatypes_for_range() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatypes_from_datatype_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) get_datatypes_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_datatypes_inputs_for_operation_group() (tvb.core.services.project_service.ProjectService method) get_default_pse_viewer() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_disk_free_space() (tvb.core.services.settings_service.SettingsService static method) get_disk_size_for_operation() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_dynamic() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_dynamic_by_name() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_dynamics_for_user() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_equation_chart() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) get_equation_for_parameter() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_execution_time_approximation() (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.core.adapters.abcadapter.ABCAdapter method) get_export_file_extension() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.obj_export.ObjSurfaceExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) get_export_file_name() (tvb.adapters.exporters.abcexporter.ABCExporter method) get_exporters_for_data() (tvb.adapters.exporters.export_manager.ExportManager method) get_field_array() (in module tvb.datatypes.sensors_bst_to_tvb) get_figure_count() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_figures_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_file_data_version() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) get_filterable_meta() (tvb.core.entities.transient.structure_entities.DataTypeMetaData class method) (tvb.core.services.project_service.ProjectService static method) get_filtered_datatypes() (in module tvb.core.entities.load) get_filtered_operations() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_filters_for_type() (tvb.basic.filters.chain.FilterChain class method) get_focal_points() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) get_focal_points_for_parameter() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) get_from_session() (in module tvb.interfaces.web.controllers.common) get_generic_entity() (tvb.core.entities.storage.root_dao.RootDAO method) (tvb.core.services.flow_service.FlowService static method) get_gid_attribute() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) get_group_description() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_group_name() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_help_url() (tvb.interfaces.web.controllers.help.help_config.HelpConfig method) get_history_status() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_images_folder() (tvb.core.entities.file.files_helper.FilesHelper method) get_input_tree() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.bct_adapters.BaseUndirected method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.abcuploader.ABCUploader method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method) (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method) (tvb.adapters.visualizers.covariance.CovarianceVisualizer method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizer method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizer method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method) (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.ica.ICA method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method) (tvb.adapters.visualizers.matrix_viewer.MappedArrayVisualizer method) (tvb.adapters.visualizers.pca.PCA method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method) (tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MappedArrayVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiser method) (tvb.adapters.visualizers.sensors.SensorsViewer method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewer method) (tvb.adapters.visualizers.surface_view.RegionMappingViewer method) (tvb.adapters.visualizers.surface_view.SurfaceViewer method) (tvb.adapters.visualizers.time_series.TimeSeries method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) (tvb.adapters.visualizers.topographic.TopographicViewer method) (tvb.adapters.visualizers.tract.TractViewer method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method) (tvb.core.adapters.abcadapter.ABCAdapter method) get_input_tree2() (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) get_inputs() (tvb.core.portlets.xml_reader.XMLPortletReader method) get_inputs_dict() (tvb.core.portlets.xml_reader.PortletWrapper method) get_label() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.obj_export.ObjSurfaceExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) get_last_data_with_uid() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_launchable_algorithms() (tvb.core.services.flow_service.FlowService method) get_launchable_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_lconn_equation() (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) get_library_folder() (tvb.basic.config.environment.Environment method) get_link() (tvb.core.entities.storage.project_dao.CaseDAO method) get_linkable_projects() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_linkable_projects_for_user() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.project_service.ProjectService static method) get_linked_datatypes_in_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_links_for_datatype() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_links_for_project() (tvb.core.entities.storage.project_dao.CaseDAO method) get_logged_user() (in module tvb.interfaces.web.controllers.common) get_logger() (in module tvb.basic.logger.builder) get_matlab_executable() (in module tvb.core.utils) get_max_burst_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_members_of_project() (tvb.core.entities.storage.project_dao.CaseDAO method) get_message_from_session() (in module tvb.interfaces.web.controllers.common) get_metadata() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) get_metric_matrix() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_min_max_values() (tvb.datatypes.structural.VolumetricDataMixin method) get_node_matrix() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_node_text() (tvb.core.entities.file.xml_metadata_handlers.XMLReader static method)

get_non_validated_entities() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_one_dimensional_list() (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) get_operation_by_gid() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operation_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operation_details() (tvb.core.services.project_service.ProjectService method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_operation_folder() (tvb.core.entities.file.files_helper.FilesHelper method) get_operation_group_by_gid() (tvb.core.services.project_service.ProjectService static method) get_operation_group_by_id() (tvb.core.services.project_service.ProjectService static method) get_operation_id() (tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation method) get_operation_meta_file_path() (tvb.core.entities.file.files_helper.FilesHelper method) get_operation_numbers() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.flow_service.FlowService static method) get_operation_process_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operationgroup_by_gid() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operationgroup_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operations_for_datatype() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_operations_for_datatype_group() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_operations_in_burst() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_operations_in_group() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_output() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.brco_importer.BRCOImporter method) (tvb.adapters.uploaders.cff_importer.CFF_Importer method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method) (tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method) (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporter method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method) (tvb.adapters.uploaders.projection_matrix_importer.BrainstormGainMatrixImporter method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method) (tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer method) (tvb.adapters.uploaders.sensors_importer.BrainstormSensorUploader method) (tvb.adapters.uploaders.sensors_importer.Sensors_Importer method) (tvb.adapters.uploaders.signals_importer.EEGLAB method) (tvb.adapters.uploaders.signals_importer.FieldTripUploader method) (tvb.adapters.uploaders.signals_importer.VHDR method) (tvb.adapters.uploaders.tvb_importer.TVBImporter method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.adapters.abcdisplayer.ABCDisplayer method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method) get_portlet() (tvb.core.entities.model.model_burst.TabConfiguration method) (tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation method) get_portlet_by_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) (tvb.core.services.burst_service.BurstService static method) get_portlet_by_identifier() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) (tvb.core.services.burst_service.BurstService static method) get_portlet_configurable_interface() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_portlet_session_configuration() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_portlet_status() (tvb.core.services.burst_service.BurstService static method) get_previews() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_previous_selected_rangers() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_project_by_gid() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_by_id() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_disk_size() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_folder() (tvb.core.entities.file.files_helper.FilesHelper method) get_project_for_operation() (tvb.core.entities.storage.project_dao.CaseDAO method) get_project_meta_file_path() (tvb.core.entities.file.files_helper.FilesHelper method) get_project_structure() (tvb.core.services.project_service.ProjectService method) get_project_structure_grouping() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_project_uploader_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) get_projects_for_user() (tvb.core.entities.storage.project_dao.CaseDAO method) get_pse_filters() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_python_filter_equivalent() (tvb.basic.filters.chain.FilterChain method) get_range_values() (tvb.core.services.operation_service.OperationService method) get_raw_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.flow_service.FlowService static method) get_reduced_simulator_interface() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_remover() (in module tvb.core.removers_factory) get_removers_dict() (tvb.core.adapters.introspector.Introspector method) get_required_disk_size() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.abcuploader.ABCUploader method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.adapters.abcdisplayer.ABCDisplayer method) get_required_memory_size() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.abcuploader.ABCUploader method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method) (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method) (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method) (tvb.adapters.visualizers.matrix_viewer.MappedArraySVGVisualizerMixin method) (tvb.adapters.visualizers.pca.PCA method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method) (tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method) (tvb.adapters.visualizers.sensors.SensorsViewer method) (tvb.adapters.visualizers.surface_view.SurfaceViewer method) (tvb.adapters.visualizers.time_series.TimeSeries method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) (tvb.adapters.visualizers.topographic.TopographicViewer method) (tvb.adapters.visualizers.tract.TractViewer method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method) (tvb.core.adapters.abcadapter.ABCAdapter method) get_results_for_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) get_select_existent_entities() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) get_selected_burst() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_selected_portlets() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_selected_stimulus() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method) get_selections_for_project() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.flow_service.FlowService static method) get_series_array_discrete() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) get_series_json() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController static method) get_session_connectivity() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method) get_session_surface() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method) get_session_tree_for_key() (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext method) get_simple_adapter_interface() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_spatial_equation() (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) get_spatial_equation_chart() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) get_sql_filter_equivalent() (tvb.basic.filters.chain.FilterChain method) get_sql_mapping() (in module tvb.core.traits.sql_mapping) get_stimulus_chunk() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) get_stored_pse_filters() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.flow_service.FlowService static method) get_summary_for_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_supported_types() (tvb.adapters.exporters.abcexporter.ABCExporter method) (tvb.adapters.exporters.obj_export.ObjSurfaceExporter method) (tvb.adapters.exporters.tvb_export.TVBExporter method) get_surface() (tvb.core.services.burst_config_serialization.SerializationManager method) get_surface_model_parameters_data() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) get_system_user() (tvb.core.entities.storage.project_dao.CaseDAO method) get_template_for_adapter() (tvb.interfaces.web.controllers.flow_controller.FlowController method) get_template_from_context() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) get_temporal_equation() (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) get_temporal_equation_chart() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) get_traited_instance_for_name() (in module tvb.basic.traits.parameters_factory) get_traited_subclasses() (in module tvb.basic.traits.parameters_factory) get_ui_description() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_ui_fields() (tvb.core.entities.transient.context_overlay.CommonDetails method) get_ui_message() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) get_ui_name() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_ui_subsection() (tvb.core.adapters.abcadapter.ABCAdapter class method) get_unique_file_name() (in module tvb.core.utils) get_update_scripts() (tvb.core.code_versions.base_classes.UpdateManager method) get_upload_algorithms() (tvb.core.services.flow_service.FlowService static method) get_upload_input_tree() (tvb.adapters.uploaders.abcuploader.ABCUploader method) (tvb.adapters.uploaders.brco_importer.BRCOImporter method) (tvb.adapters.uploaders.cff_importer.CFF_Importer method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method) (tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method) (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporter method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method) (tvb.adapters.uploaders.projection_matrix_importer.BrainstormGainMatrixImporter method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method) (tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer method) (tvb.adapters.uploaders.sensors_importer.BrainstormSensorUploader method) (tvb.adapters.uploaders.sensors_importer.Sensors_Importer method) (tvb.adapters.uploaders.signals_importer.EEGLAB method) (tvb.adapters.uploaders.signals_importer.FieldTripUploader method) (tvb.adapters.uploaders.signals_importer.VHDR method) (tvb.adapters.uploaders.tract_importer.ZipTxtTractsImporter method) (tvb.adapters.uploaders.tvb_importer.TVBImporter method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method) get_upload_overlay() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_uploader_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_url_adapter() (tvb.interfaces.web.controllers.base_controller.BaseController static method) get_user_by_email() (tvb.core.entities.storage.project_dao.CaseDAO method) get_user_by_id() (tvb.core.entities.storage.project_dao.CaseDAO method) (tvb.core.services.user_service.UserService static method) get_user_by_name() (tvb.core.entities.storage.project_dao.CaseDAO method) get_user_for_datatype() (tvb.core.entities.storage.project_dao.CaseDAO method) get_users_for_project() (tvb.core.services.user_service.UserService method) get_value_on_axe() (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter static method) get_values_of_datatype() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) get_view_steps() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method) get_viewer_color_scheme() (tvb.interfaces.web.controllers.users_controller.UserController method) get_visualisers_categories() (tvb.core.entities.storage.operation_dao.OperationDAO method) get_visualisers_category() (tvb.core.services.flow_service.FlowService static method) get_visualization_steps() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_visualizers_for_group() (tvb.core.services.flow_service.FlowService method) get_visualizers_for_operation_id() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) get_volume_slice() (tvb.datatypes.structural.VolumetricDataMixin method) get_volume_view() (tvb.datatypes.structural.VolumetricDataMixin method) get_weights() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method) get_workflow_by_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_workflow_for_operation_id() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_workflow_step_by_step_index() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_workflow_step_for_operation() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_workflow_steps() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method) get_workflow_steps_for_position() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_workflows() (tvb.core.entities.transient.burst_export_entities.BurstInformation method) get_workflows_for_burst() (tvb.core.entities.storage.workflow_dao.WorkflowDAO method) get_x_axis_range() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) getadapterinterface() (tvb.interfaces.web.controllers.flow_controller.FlowController method) getfiltereddatatypes() (tvb.interfaces.web.controllers.flow_controller.FlowController method) getmemberspage() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) gettemplatefordimensionselect() (tvb.interfaces.web.controllers.flow_controller.FlowController method) gid (tvb.core.entities.transient.structure_entities.GenericMetaData attribute) GIFTIParser (class in tvb.adapters.uploaders.gifti.parser) GIFTISurfaceImporter (class in tvb.adapters.uploaders.gifti_surface_importer) GIFTITimeSeriesImporter (class in tvb.adapters.uploaders.gifti_timeseries_importer) GlobalAverage (in module tvb.simulator.monitors) GlobalVariance (in module tvb.analyzers.metric_variance_global) graph_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) graph_components (tvb.core.entities.transient.graph_structures.FullGraphStructure attribute) GraphComponent (class in tvb.core.entities.transient.graph_structures) group (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) group_noise_array_by_state_var() (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController static method) group_operation_launch() (tvb.core.services.operation_service.OperationService method) group_parameter_values_by_name() (tvb.core.services.burst_config_serialization.SerializationManager static method)

H

H5Reader (class in tvb.basic.readers) hamming() (in module tvb.analyzers.node_coherence) handle_error() (in module tvb.interfaces.web.controllers.decorators) has_children (tvb.core.entities.transient.structure_entities.StructureNode attribute) has_error_message() (in module tvb.interfaces.web.controllers.common) has_file_like() (tvb.basic.readers.ZipReader method) has_finished() (in module tvb.core.entities.model.model_operation) has_model_pse_ranges() (tvb.core.services.burst_config_serialization.SerializationManager method) has_nan (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) HAVE_STATE_VARIABLES (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter attribute) HDF5StorageManager (class in tvb.core.entities.file.hdf5_storage_manager) HDF5StorageManager.H5pyStorageBuffer (class in tvb.core.entities.file.hdf5_storage_manager) heaviside() (in module tvb.simulator.common)

HELP_PAGE_PATH (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) HelpConfig (class in tvb.interfaces.web.controllers.help.help_config) HelpController (class in tvb.interfaces.web.controllers.help.help_controller) HEMISPHERE_INFO (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) HEMISPHERE_RIGHT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) HeunDeterministic (in module tvb.simulator.integrators) HeunStochastic (in module tvb.simulator.integrators) HistogramViewer (class in tvb.adapters.visualizers.histogram) Hopfield (in module tvb.simulator.models.hopfield) horizon (tvb.simulator.common.Buffer attribute) HRFKernelEquation (in module tvb.datatypes.equations) HyperbolicTangent (in module tvb.simulator.coupling)

I

ICA (class in tvb.adapters.visualizers.ica) ICAAdapter (class in tvb.adapters.analyzers.ica_adapter) Identity (in module tvb.simulator.integrators) iEEG (in module tvb.simulator.monitors) IMAGES_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute) ImaginaryCoherenceDisplay (class in tvb.adapters.visualizers.complex_imaginary_coherence) ImmutableAttrError import_conn_zip() (in module tvb.interfaces.command.lab) import_h5() (in module tvb.interfaces.command.demos.importers.h5_import) import_project_operations() (tvb.core.services.import_service.ImportService method) import_project_structure() (tvb.core.services.import_service.ImportService method) import_workflow_steps() (tvb.core.services.import_service.ImportService method) import_workflows() (tvb.core.services.import_service.ImportService method) ImportService (class in tvb.core.services.import_service) IN_OPERATION_EXECUTION_PROCESS (tvb.basic.config.settings.ClusterSettings attribute) in_operations (tvb.core.entities.transient.graph_structures.GraphComponent attribute) IncompatibleFileManagerException IncorrectTypeAttrError IndependentComponents (in module tvb.datatypes.mode_decompositions) index() (tvb.core.entities.transient.burst_export_entities.StepInfo method) (tvb.interfaces.web.controllers.base_controller.BaseController method) (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController method) (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method) (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController method) (tvb.interfaces.web.controllers.users_controller.UserController method) index_in_tab (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration attribute) IndexArray (in module tvb.datatypes.arrays) infected_threshold() (in module tvb.adapters.creators.allen_creator) init_cherrypy() (in module tvb.interfaces.web.run) init_noise_config_values() (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController static method) initialize() (in module tvb.core.services.initializer) (tvb.simulator.history.BaseHistory method) (tvb.simulator.history.DenseHistory method) initialize_for_deployment() (tvb.basic.config.profile_settings.BaseSettingsProfile method) (tvb.config.profile_settings.TestSQLiteProfile method) (tvb.config.profile_settings.WebSettingsProfile method) initialize_on_load() (in module tvb.core.traits.db_events) initialize_profile() (tvb.basic.config.profile_settings.BaseSettingsProfile method) (tvb.basic.config.profile_settings.LibrarySettingsProfile method) (tvb.config.profile_settings.TestSQLiteProfile method) (tvb.config.profile_settings.WebSettingsProfile method) initialize_startup() (in module tvb.core.entities.model_manager) initialize_storage() (in module tvb.core.services.project_service) initialized (tvb.simulator.descriptors.Final.State attribute) (tvb.simulator.descriptors.NDArray.State attribute) initiate_operation() (tvb.core.services.operation_service.OperationService method) initiate_prelaunch() (tvb.core.services.operation_service.OperationService method) input_datatypes (tvb.core.entities.transient.graph_structures.GraphComponent attribute) InputTreeManager (class in tvb.core.adapters.input_tree) (class in tvb.core.adapters.input_tree2) instance_state (tvb.simulator.descriptors.NDArray attribute) Integer (in module tvb.basic.traits.types_basic) IntegerArray (in module tvb.datatypes.arrays) Integrator (in module tvb.simulator.integrators) integrator_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method)

IntegratorStochastic (in module tvb.simulator.integrators) INTERFACE_ATTRIBUTES (tvb.core.adapters.abcadapter.ABCAdapter attribute) INTERFACE_ATTRIBUTES_ONLY (tvb.core.adapters.abcadapter.ABCAdapter attribute) INTERNAL_SENSORS (tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute) introspect() (tvb.core.adapters.introspector.Introspector method) IntrospectionException Introspector (class in tvb.core.adapters.introspector) InvalidExportDataException InvalidFilterChainInput InvalidFilterEntity InvalidParameterException InvalidPortletConfiguration InvalidSettingsException InvalidTransactionAccess InvalidUpgradeScriptException invalis_name_msg (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) iround() (in module tvb.simulator.common) is_data_a_group() (tvb.adapters.exporters.abcexporter.ABCExporter method) is_datatype_group() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) is_distribution() (tvb.basic.config.environment.Environment static method) is_file_up_to_date() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) is_first_run() (tvb.basic.config.stored.SettingsManager method) (tvb.basic.profile.TvbProfile static method) is_framework_present() (tvb.basic.config.environment.Environment method) is_group (tvb.core.entities.transient.structure_entities.StructureNode attribute) is_irelevant (tvb.core.entities.transient.structure_entities.StructureNode attribute) is_library_mode() (tvb.basic.profile.TvbProfile static method) is_link (tvb.core.entities.transient.structure_entities.StructureNode attribute) is_linux() (tvb.basic.config.environment.Environment method) is_linux_deployment() (tvb.basic.config.environment.Environment method) is_mac() (tvb.basic.config.environment.Environment static method) is_mac_deployment() (tvb.basic.config.environment.Environment method) IS_RUNNING_ON_CLUSTER_NODE (tvb.basic.config.settings.ClusterSettings attribute) is_storage_ready() (tvb.interfaces.web.controllers.users_controller.UserController method) is_upload_operation() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService static method) is_username_valid() (tvb.core.services.user_service.UserService static method) is_valid_hdf5_file() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) is_windows() (tvb.basic.config.environment.Environment static method) is_windows_deployment() (tvb.basic.config.environment.Environment method) IsoclinePSEAdapter (class in tvb.adapters.visualizers.pse_isocline) ispublic() (in module tvb.basic.traits.util)

J

JansenRit (in module tvb.simulator.models.jansen_rit) JOB_ID_STRING (tvb.basic.config.settings.ClusterSettings attribute) JointDegree (class in tvb.adapters.analyzers.bct_degree_adapters)

jsonify() (in module tvb.interfaces.web.controllers.decorators) JSONType (in module tvb.basic.traits.types_basic)

K

KEY_ADMIN_EMAIL (tvb.core.services.settings_service.SettingsService attribute) KEY_ADMIN_NAME (tvb.core.services.settings_service.SettingsService attribute) KEY_ADMIN_PWD (tvb.core.services.settings_service.SettingsService attribute) KEY_ALL (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_ATTRIBUTES (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_AUTHOR (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_BI_WORKFLOWS (tvb.core.entities.transient.burst_export_entities.BurstInformation attribute) KEY_BURST (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CACHED_DYNAMIC_MODEL (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController attribute) KEY_CLASS_NAME (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CLUSTER (tvb.core.services.settings_service.SettingsService attribute) KEY_CLUSTER_SCHEDULER (tvb.core.services.settings_service.SettingsService attribute) KEY_CONDITION (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_CONTENT (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) KEY_CONTENT_MODULE (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) KEY_COUNT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CREATE_DATA_DAY (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CREATE_DATA_MONTH (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_CURRENT_ADAPTER_INFO (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext attribute) KEY_DATATYPE (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_DATATYPE_ID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_DATE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_DB_URL (tvb.core.services.settings_service.SettingsService attribute) KEY_DEFAULT (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_DESCRIPTION (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_DISABLED (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_DTYPE (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_EDGE_TRACT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) KEY_EDGE_WEIGHT (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) KEY_EXPORT_DATE (tvb.core.entities.transient.burst_export_entities.BaseExportHelp attribute) KEY_FILENAME (tvb.core.entities.transient.structure_entities.GenericMetaData attribute) KEY_FILTERABLE (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_FK_OPERATION_GROUP (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_GID (tvb.core.entities.transient.pse.ContextDiscretePSE attribute) (tvb.core.entities.transient.structure_entities.GenericMetaData attribute) KEY_ID (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_INVALID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_IS_ADAPTER (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) KEY_LABEL (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_LINK (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_MATLAB_EXECUTABLE (tvb.core.services.settings_service.SettingsService attribute) KEY_MAX_DISK_SPACE_USR (tvb.core.services.settings_service.SettingsService attribute) KEY_MAX_NR_SURFACE_VERTEX (tvb.core.services.settings_service.SettingsService attribute) KEY_MAX_NR_THREADS (tvb.core.services.settings_service.SettingsService attribute) KEY_MAX_RANGE (tvb.core.services.settings_service.SettingsService attribute) KEY_MODULE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute)

KEY_NAME (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_NODE_COORDINATES (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) KEY_NODE_HEMISPHERE (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) KEY_NODE_LABEL (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) KEY_NODE_REGION (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) KEY_NODE_TYPE (tvb.core.entities.transient.pse.ContextDiscretePSE attribute) (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OP_GROUP_ID (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_ALGORITHM (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_FILTERS (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) KEY_OPERATION_GROUP_NAME (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_ID (tvb.core.entities.transient.pse.ContextDiscretePSE attribute) KEY_OPERATION_TAG (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPERATION_TYPE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_OPTIONS (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_PORT (tvb.core.services.settings_service.SettingsService attribute) KEY_PORTLET_CONFIGURATION (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext attribute) KEY_RELEVANCY (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_REQUIRED (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_SELECTED_DB (tvb.core.services.settings_service.SettingsService attribute) KEY_STATE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_STORAGE (tvb.core.services.settings_service.SettingsService attribute) KEY_SUBJECT (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_1 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_2 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_3 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_4 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TAG_5 (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TITLE (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) KEY_TOOLTIP (tvb.core.entities.transient.pse.ContextDiscretePSE attribute) KEY_TREE_DEFAULT (tvb.interfaces.web.entities.context_selected_adapter.SelectedAdapterContext attribute) KEY_TYPE (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_UI_HIDE (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_URL_WEB (tvb.core.services.settings_service.SettingsService attribute) KEY_VALUE (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEY_VERSION (tvb.core.entities.transient.burst_export_entities.BaseExportHelp attribute) KEY_VIEW_STEPS (tvb.core.entities.transient.burst_export_entities.WorkflowInformation attribute) KEY_WF_STEPS (tvb.core.entities.transient.burst_export_entities.WorkflowInformation attribute) KEYS_DISPLAY_ORDER (tvb.core.services.settings_service.SettingsService attribute) KEYWORD_OPTION (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEYWORD_PARAMS (tvb.core.adapters.abcadapter.ABCAdapter attribute) KEYWORD_SEPARATOR (tvb.core.adapters.abcadapter.ABCAdapter attribute) Kuramoto (in module tvb.simulator.coupling) (in module tvb.simulator.models.oscillator) KuramotoIndex (in module tvb.analyzers.metric_kuramoto_index) kwd (tvb.basic.traits.util.Args attribute)

L

LarterBreakspear (in module tvb.simulator.models.larter_breakspear) launch() (tvb.adapters.analyzers.bct_adapters.BaseBCT method) (tvb.adapters.analyzers.bct_adapters.BaseUndirected method) (tvb.adapters.analyzers.bct_adapters.DistanceDBIN method) (tvb.adapters.analyzers.bct_adapters.DistanceNETW method) (tvb.adapters.analyzers.bct_adapters.DistanceRDM method) (tvb.adapters.analyzers.bct_adapters.ModularityOCSM method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityEdgeBinary method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityEdgeWeighted method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityEigenVector method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityKCoreness method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityKCorenessBD method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityNodeBinary method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityNodeWeighted method) (tvb.adapters.analyzers.bct_centrality_adapters.CentralityShortcuts method) (tvb.adapters.analyzers.bct_centrality_adapters.FlowCoefficients method) (tvb.adapters.analyzers.bct_centrality_adapters.ParticipationCoefficient method) (tvb.adapters.analyzers.bct_centrality_adapters.ParticipationCoefficientSign method) (tvb.adapters.analyzers.bct_centrality_adapters.SubgraphCentrality method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficient method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientBU method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientWD method) (tvb.adapters.analyzers.bct_clustering_adapters.ClusteringCoefficientWU method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityBinaryDirected method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityBinaryUnDirected method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityWeightedDirected method) (tvb.adapters.analyzers.bct_clustering_adapters.TransitivityWeightedUnDirected method) (tvb.adapters.analyzers.bct_degree_adapters.Degree method) (tvb.adapters.analyzers.bct_degree_adapters.DegreeIOD method) (tvb.adapters.analyzers.bct_degree_adapters.DensityDirected method) (tvb.adapters.analyzers.bct_degree_adapters.JointDegree method) (tvb.adapters.analyzers.bct_degree_adapters.MatchingIndex method) (tvb.adapters.analyzers.bct_degree_adapters.Strength method) (tvb.adapters.analyzers.bct_degree_adapters.StrengthISOS method) (tvb.adapters.analyzers.bct_degree_adapters.StrengthWeights method) (tvb.adapters.analyzers.cross_correlation_adapter.CrossCorrelateAdapter method) (tvb.adapters.analyzers.cross_correlation_adapter.PearsonCorrelationCoefficientAdapter method) (tvb.adapters.analyzers.fcd_adapter.FunctionalConnectivityDynamicsAdapter method) (tvb.adapters.analyzers.fmri_balloon_adapter.BalloonModelAdapter method) (tvb.adapters.analyzers.fourier_adapter.FourierAdapter method) (tvb.adapters.analyzers.ica_adapter.ICAAdapter method) (tvb.adapters.analyzers.metrics_group_timeseries.TimeseriesMetricsAdapter method) (tvb.adapters.analyzers.node_coherence_adapter.NodeCoherenceAdapter method) (tvb.adapters.analyzers.node_complex_coherence_adapter.NodeComplexCoherenceAdapter method) (tvb.adapters.analyzers.node_covariance_adapter.NodeCovarianceAdapter method) (tvb.adapters.analyzers.pca_adapter.PCAAdapter method) (tvb.adapters.analyzers.wavelet_adapter.ContinuousWaveletTransformAdapter method) (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder method) (tvb.adapters.creators.connectivity_creator.ConnectivityCreator method) (tvb.adapters.creators.local_connectivity_creator.LocalConnectivityCreator method) (tvb.adapters.creators.stimulus_creator.RegionStimulusCreator method) (tvb.adapters.creators.stimulus_creator.SurfaceStimulusCreator method) (tvb.adapters.simulator.simulator_adapter.SimulatorAdapter method) (tvb.adapters.uploaders.brco_importer.BRCOImporter method) (tvb.adapters.uploaders.cff_importer.CFF_Importer method) (tvb.adapters.uploaders.connectivity_measure_importer.ConnectivityMeasureImporter method) (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter method) (tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader method) (tvb.adapters.uploaders.gifti_surface_importer.GIFTISurfaceImporter method) (tvb.adapters.uploaders.gifti_timeseries_importer.GIFTITimeSeriesImporter method) (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter method) (tvb.adapters.uploaders.networkx_importer.NetworkxConnectivityImporter method) (tvb.adapters.uploaders.nifti_importer.NIFTIImporter method) (tvb.adapters.uploaders.obj_importer.ObjSurfaceImporter method) (tvb.adapters.uploaders.projection_matrix_importer.BrainstormGainMatrixImporter method) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter method) (tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer method) (tvb.adapters.uploaders.sensors_importer.BrainstormSensorUploader method) (tvb.adapters.uploaders.sensors_importer.Sensors_Importer method) (tvb.adapters.uploaders.signals_importer.EEGLAB method) (tvb.adapters.uploaders.signals_importer.FieldTripUploader method) (tvb.adapters.uploaders.signals_importer.VHDR method) (tvb.adapters.uploaders.tract_importer.TrackvizTractsImporter method) (tvb.adapters.uploaders.tract_importer.ZipTxtTractsImporter method) (tvb.adapters.uploaders.tvb_importer.TVBImporter method) (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter method) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter method) (tvb.adapters.visualizers.annotations_viewer.ConnectivityAnnotationsView method) (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) (tvb.adapters.visualizers.complex_imaginary_coherence.ImaginaryCoherenceDisplay method) (tvb.adapters.visualizers.connectivity.ConnectivityViewer method) (tvb.adapters.visualizers.connectivity_edge_bundle.ConnectivityEdgeBundle method) (tvb.adapters.visualizers.covariance.CovarianceVisualizer method) (tvb.adapters.visualizers.cross_coherence.CrossCoherenceVisualizer method) (tvb.adapters.visualizers.cross_correlation.CrossCorrelationVisualizer method) (tvb.adapters.visualizers.eeg_monitor.EegMonitor method) (tvb.adapters.visualizers.fourier_spectrum.FourierSpectrumDisplay method) (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.ica.ICA method) (tvb.adapters.visualizers.local_connectivity_view.LocalConnectivityViewer method) (tvb.adapters.visualizers.matrix_viewer.MappedArrayVisualizer method) (tvb.adapters.visualizers.pca.PCA method) (tvb.adapters.visualizers.pearson_cross_correlation.PearsonCorrelationCoefficientVisualizer method) (tvb.adapters.visualizers.pearson_edge_bundle.PearsonEdgeBundle method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter method) (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter method) (tvb.adapters.visualizers.region_volume_mapping.ConnectivityMeasureVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MappedArrayVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.MriVolumeVisualizer method) (tvb.adapters.visualizers.region_volume_mapping.RegionVolumeMappingVisualiser method) (tvb.adapters.visualizers.sensors.SensorsViewer method) (tvb.adapters.visualizers.surface_view.ConnectivityMeasureOnSurfaceViewer method) (tvb.adapters.visualizers.surface_view.RegionMappingViewer method) (tvb.adapters.visualizers.surface_view.SurfaceViewer method) (tvb.adapters.visualizers.time_series.TimeSeries method) (tvb.adapters.visualizers.time_series_volume.TimeSeriesVolumeVisualiser method) (tvb.adapters.visualizers.topographic.TopographicViewer method) (tvb.adapters.visualizers.tract.TractViewer method) (tvb.adapters.visualizers.wavelet_spectrogram.WaveletSpectrogramVisualizer method) (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter method) launch_burst() (tvb.core.services.burst_service.BurstService method) (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) launch_full_visualizer() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) launch_operation() (tvb.core.services.operation_service.OperationService method) launch_simulation_workflow() (in module tvb.interfaces.command.demos.operations.run_workflow) launch_validation() (tvb.core.model_validations.ModelValidator method) launch_visualization() (tvb.core.services.burst_service.BurstService static method) (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) LaunchException launchloader() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) LeafNode (class in tvb.basic.traits.itree_model) LEFT_SUFFIX_RE (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) legendtext (built-in class) LIBRARY_PROFILE (tvb.basic.profile.TvbProfile attribute) LibraryImportError LibraryModulesFinder (class in tvb.basic.config.utils) LibrarySettingsProfile (class in tvb.basic.config.profile_settings) LINE (tvb.interfaces.command.benchmark.Bench attribute) LINE_SEPARATOR (tvb.core.entities.transient.pse.ContextDiscretePSE attribute) Linear (in module tvb.datatypes.equations) (in module tvb.simulator.coupling) (in module tvb.simulator.models.linear) linear_interp1d() (in module tvb.simulator.common) Links (in module tvb.core.entities.model.model_datatype) List (in module tvb.basic.traits.types_basic) list_datatypes() (in module tvb.interfaces.command.lab) list_projects() (in module tvb.interfaces.command.lab) load_burst() (tvb.core.services.burst_service.BurstService method) (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) load_burst_entity() (tvb.core.services.import_service.ImportService method) load_burst_from_json() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) load_burst_history() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) load_configured_visualizers() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method)

load_datatype_from_file() (tvb.core.services.import_service.ImportService method) load_dt() (in module tvb.interfaces.command.lab) load_entity_by_gid() (in module tvb.core.entities.load) (tvb.core.adapters.abcadapter.ABCAdapter static method) load_figure() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.figure_service.FigureService static method) load_from_dict() (tvb.core.entities.transient.burst_export_entities.BurstInformation static method) (tvb.core.entities.transient.burst_export_entities.WorkflowInformation static method) (tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation static method) (tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation static method) load_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) load_module() (tvb.basic.config.utils.LibraryModulesFinder method) load_operation() (tvb.core.services.flow_service.FlowService static method) load_operation_by_gid() (tvb.core.services.project_service.ProjectService static method) load_region_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) load_surface_stimulus() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) load_tab_configuration() (tvb.core.services.burst_service.BurstService method) LocalConnectivity (in module tvb.datatypes.local_connectivity) LocalConnectivityController (class in tvb.interfaces.web.controllers.spatial.local_connectivity_controller) LocalConnectivityCreator (class in tvb.adapters.creators.local_connectivity_creator) LocalConnectivityViewer (class in tvb.adapters.visualizers.local_connectivity_view) LOCALHOST (tvb.basic.config.settings.WebSettings attribute) LOCKS (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute) log (tvb.core.portlets.portlet_configurer.PortletConfigurer attribute) log_debug() (in module tvb.simulator.common) log_debug_array() (in module tvb.basic.traits.util) log_warnings() (in module tvb.core.traits.core) LOGGER (tvb.adapters.uploaders.abcuploader.ABCUploader attribute) (tvb.adapters.uploaders.brco.parser.XMLParser attribute) logger (tvb.adapters.uploaders.cff_importer.CFF_Importer attribute) (tvb.adapters.uploaders.fieldtrip_importer.FieldTripUploader attribute) (tvb.adapters.uploaders.projection_matrix_importer.ProjectionMatrixSurfaceEEGImporter attribute) (tvb.adapters.uploaders.region_mapping_importer.RegionMapping_Importer attribute) (tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute) (tvb.adapters.uploaders.signals_importer.EEGLAB attribute) (tvb.adapters.uploaders.signals_importer.FieldTripUploader attribute) (tvb.adapters.uploaders.zip_surface_importer.ZIPSurfaceImporter attribute) (tvb.core.entities.storage.root_dao.RootDAO attribute) (tvb.core.portlets.xml_reader.XMLPortletReader attribute) (tvb.interfaces.command.demos.importers.new_importer.FooDataImporter attribute) LOGGER_CONFIG_FILE_NAME (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) (tvb.basic.config.profile_settings.LibrarySettingsProfile attribute) (tvb.basic.config.profile_settings.MATLABLibraryProfile attribute) (tvb.basic.config.profile_settings.TestLibraryProfile attribute) (tvb.config.profile_settings.WebSettingsProfile attribute) LoggerBuilder (class in tvb.basic.logger.builder) LoginForm (class in tvb.interfaces.web.controllers.users_controller) logout() (tvb.interfaces.web.controllers.users_controller.UserController method) LookUpTable (in module tvb.datatypes.lookup_tables)

M

MAGIC_NUMBER (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) main() (in module tvb.core.model_validations) (in module tvb.interfaces.command.benchmark) MAIN_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) make_model_and_integrator() (tvb.core.services.burst_config_serialization.SerializationManager method) make_surface() (in module tvb.datatypes.surfaces) map_astr() (in module tvb.simulator.common) MapAsJson (in module tvb.basic.traits.types_basic) MappedArray (in module tvb.datatypes.arrays) MappedArraySVGVisualizerMixin (class in tvb.adapters.visualizers.matrix_viewer) MappedArrayVisualizer (class in tvb.adapters.visualizers.matrix_viewer) MappedArrayVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping) MappedType (in module tvb.core.traits.types_mapped) MappedTypeLight (in module tvb.basic.traits.types_mapped_light) mark_burst_finished() (tvb.core.services.workflow_service.WorkflowService method) mark_file_for_delete() (tvb.interfaces.web.controllers.base_controller.BaseController static method) mark_invalid() (tvb.core.entities.transient.structure_entities.DataTypeMetaData method) MatchingIndex (class in tvb.adapters.analyzers.bct_degree_adapters) matlab() (tvb.adapters.analyzers.matlab_worker.MatlabWorker method) matlab_paths (tvb.adapters.analyzers.matlab_worker.MatlabWorker attribute) MATLAB_PROFILE (tvb.basic.profile.TvbProfile attribute) MATLABLibraryProfile (class in tvb.basic.config.profile_settings) MatlabValidator (class in tvb.interfaces.web.controllers.settings_controller) MatlabWorker (class in tvb.adapters.analyzers.matlab_worker) MatTimeSeriesImporter (class in tvb.adapters.uploaders.mat_timeseries_importer) MAX_ASYNC_CONNECTIONS (tvb.basic.config.settings.DBSettings attribute) MAX_CONNECTIONS (tvb.basic.config.settings.DBSettings attribute) MAX_PREVIEW_DATA_LENGTH (tvb.adapters.visualizers.time_series.TimeSeries attribute) MAX_RAY (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) MAX_VALUE (tvb.interfaces.web.controllers.settings_controller.SurfaceVerticesNrValidator attribute)

MAX_WEIGHT_VALUE (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) MeasurePointsSelection (in module tvb.core.entities.model.model_datatype) MEG (in module tvb.simulator.monitors) MEG_SENSORS (tvb.adapters.uploaders.sensors_importer.Sensors_Importer attribute) merge() (tvb.datatypes.surfaces.ValidationResult method) merge_data() (tvb.core.entities.transient.structure_entities.DataTypeMetaData method) MESSAGE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) meta_attributes_list (tvb.core.entities.transient.context_overlay.CommonDetails attribute) MetaClassFactory() (in module tvb.core.entities.storage.session_maker) metadata2tree() (tvb.core.entities.transient.structure_entities.StructureNode static method) MetaType (class in tvb.basic.traits.core) MIN_RAY (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) MIN_WEIGHT_VALUE (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) MissingDataFileException MissingDataSetException MissingEntityException MixtureOfGammas (in module tvb.datatypes.equations) Model (in module tvb.simulator.models.base) model_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) ModelNumbaDfun (in module tvb.simulator.models.base) ModelValidator (class in tvb.core.model_validations) ModularityOCSM (class in tvb.adapters.analyzers.bct_adapters) ModularityOpCSMU (class in tvb.adapters.analyzers.bct_adapters) Monitor (in module tvb.simulator.monitors) mouse_brain_visualizer() (in module tvb.adapters.creators.allen_creator) move_datatype() (tvb.core.entities.file.files_helper.FilesHelper method) MriVolumeVisualizer (class in tvb.adapters.visualizers.region_volume_mapping) multiline_math_directives_to_matjax() (in module tvb.basic.traits.util) Multiplicative (in module tvb.simulator.noise)

N

n_cvar (tvb.simulator.history.BaseHistory attribute) n_mode (tvb.simulator.history.BaseHistory attribute) n_nnzr (tvb.simulator.history.SparseHistory attribute) n_nnzw (tvb.simulator.history.SparseHistory attribute) n_node (tvb.simulator.history.BaseHistory attribute) n_time (tvb.simulator.history.BaseHistory attribute) name (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration attribute) (tvb.core.entities.transient.graph_structures.NodeStructure attribute) NAME_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) nan_allowed() (in module tvb.core.adapters.abcadapter) nan_not_allowed() (in module tvb.core.adapters.abcadapter) nbytes (tvb.simulator.history.BaseHistory attribute) (tvb.simulator.history.DenseHistory attribute) (tvb.simulator.history.SparseHistory attribute) NDArray (class in tvb.simulator.descriptors) NDArray.State (class in tvb.simulator.descriptors) ndarray_to_http_binary() (in module tvb.interfaces.web.controllers.decorators) NerfTable (in module tvb.datatypes.lookup_tables) NestedTransactionUnsupported NetworkxConnectivityImporter (class in tvb.adapters.uploaders.networkx_importer) NetworkxParser (class in tvb.adapters.uploaders.networkx_connectivity.parser) new_burst_configuration() (tvb.core.services.burst_service.BurstService method) new_portlet_configuration() (tvb.core.services.burst_service.BurstService method) new_project() (in module tvb.interfaces.command.lab) NEW_SELECTION_NAME (tvb.interfaces.web.controllers.flow_controller.FlowController attribute) NIFTIImporter (class in tvb.adapters.uploaders.nifti_importer) NIFTIParser (class in tvb.adapters.uploaders.nifti.parser) nnz_col_el_idx (tvb.simulator.history.SparseHistory attribute) nnz_idelays (tvb.simulator.history.SparseHistory attribute) nnz_mask (tvb.simulator.history.SparseHistory attribute) nnz_row_el_idx (tvb.simulator.history.SparseHistory attribute)

nnz_row_idx (tvb.simulator.history.SparseHistory attribute) nnz_weights (tvb.simulator.history.SparseHistory attribute) no_dynamics_page() (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method) node_entity_id (tvb.core.entities.transient.graph_structures.NodeData attribute) NODE_ENV (tvb.basic.config.settings.ClusterSettings attribute) node_gid (tvb.core.entities.transient.graph_structures.NodeStructure attribute) node_subtitle (tvb.core.entities.transient.graph_structures.NodeData attribute) node_type (tvb.core.entities.transient.graph_structures.NodeData attribute) NodeCoherence (in module tvb.analyzers.node_coherence) NodeCoherenceAdapter (class in tvb.adapters.analyzers.node_coherence_adapter) NodeComplexCoherence (in module tvb.analyzers.node_complex_coherence) NodeComplexCoherenceAdapter (class in tvb.adapters.analyzers.node_complex_coherence_adapter) NodeCovariance (in module tvb.analyzers.node_covariance) NodeCovarianceAdapter (class in tvb.adapters.analyzers.node_covariance_adapter) NodeData (class in tvb.core.entities.transient.graph_structures) noderemove() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) NodeStructure (class in tvb.core.entities.transient.graph_structures) Noise (in module tvb.simulator.noise) noise_configurable_parameters() (tvb.core.adapters.abcadapter.ABCAdapter method) NoiseConfigurationController (class in tvb.interfaces.web.controllers.burst.noise_configuration_controller) NoMemoryAvailableException normalize_sensors() (tvb.adapters.visualizers.topographic.TopographyCalculations static method) NORMALS_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) NotAllowed NotAuthenticated nullcline() (in module tvb.adapters.visualizers.phase_plane_interactive) NumericNode (class in tvb.basic.traits.itree_model) numpy_add_at() (in module tvb.simulator.common) (in module tvb.simulator.monitors) (in module tvb.simulator.simulator)

O

ObjParser (class in tvb.adapters.uploaders.obj.parser) ObjSurface (class in tvb.adapters.uploaders.obj.surface) ObjSurfaceExporter (class in tvb.adapters.exporters.obj_export) ObjSurfaceImporter (class in tvb.adapters.uploaders.obj_importer) ObjWriter (class in tvb.adapters.uploaders.obj.parser) OP_GID (tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation attribute) open_session() (tvb.core.entities.storage.session_maker.SessionsStack method) OpenSurface (in module tvb.datatypes.surfaces) Operation (in module tvb.core.entities.model.model_operation) operation (tvb.basic.filters.chain.FilterChain attribute) OPERATION_FOLDER_PREFIX (tvb.adapters.exporters.tvb_export.TVBExporter attribute) operation_parent (tvb.core.entities.transient.graph_structures.GraphComponent attribute) operation_replacement (tvb.basic.filters.chain.FilterChain attribute) OperationDAO (class in tvb.core.entities.storage.operation_dao) OperationException

OperationExecutor (class in tvb.core.services.backend_client) OperationGroup (in module tvb.core.entities.model.model_operation) OperationOverlayDetails (class in tvb.core.entities.transient.context_overlay) OperationProcessIdentifier (in module tvb.core.entities.model.model_operation) OperationService (class in tvb.core.services.operation_service) OPERATORS (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) Option (class in tvb.basic.traits.itree_model) order_number (tvb.basic.traits.core.TraitsInfo attribute) ORIENTATION_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) OrientationArray (in module tvb.datatypes.arrays) OTHER_COLOR (tvb.adapters.visualizers.connectivity.Connectivity2DViewer attribute) output_datatypes (tvb.core.entities.transient.graph_structures.GraphComponent attribute) OverlayTabDefinition (class in tvb.interfaces.web.entities.context_overlay) overwrites (tvb.core.model_validations.ModelValidator attribute)

P

PAGE_SIZE (tvb.adapters.visualizers.brain.BrainViewer attribute) page_size (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) PARAM_FIGURE_SIZE (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) ParameterExplorationController (class in tvb.interfaces.web.controllers.burst.exploration_controller) parameters_changed() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) parents_and_grandparents_finder() (in module tvb.adapters.creators.allen_creator) parse() (tvb.adapters.uploaders.gifti.parser.GIFTIParser method) (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser method) (tvb.adapters.uploaders.nifti.parser.NIFTIParser method) parse_f() (tvb.adapters.uploaders.obj.parser.ObjParser method) parse_json_parameters() (in module tvb.core.utils) parse_slice() (in module tvb.basic.arguments_serialisation) parse_svn_version() (tvb.basic.config.settings.VersionSettings static method) parse_v() (tvb.adapters.uploaders.obj.parser.ObjParser method) parse_vn() (tvb.adapters.uploaders.obj.parser.ObjParser method) parse_vt() (tvb.adapters.uploaders.obj.parser.ObjParser method) parse_xml_content() (tvb.core.entities.file.files_helper.FilesHelper static method) parse_xml_content_to_dict() (tvb.core.entities.file.xml_metadata_handlers.XMLReader method) ParseException ParticipationCoefficient (class in tvb.adapters.analyzers.bct_centrality_adapters) ParticipationCoefficientSign (class in tvb.adapters.analyzers.bct_centrality_adapters) path2url_part() (in module tvb.core.utils) paths2url() (in module tvb.datatypes.surfaces) (tvb.core.adapters.abcdisplayer.ABCDisplayer static method) PCA (class in tvb.adapters.visualizers.pca) (in module tvb.analyzers.pca) PCAAdapter (class in tvb.adapters.analyzers.pca_adapter) PearsonCorrelationCoefficientAdapter (class in tvb.adapters.analyzers.cross_correlation_adapter) PearsonCorrelationCoefficientVisualizer (class in tvb.adapters.visualizers.pearson_cross_correlation) PearsonEdgeBundle (class in tvb.adapters.visualizers.pearson_edge_bundle) permutation (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityParser attribute) persist_operation_state() (tvb.core.services.workflow_service.WorkflowService method) phase_space_d3() (in module tvb.adapters.visualizers.phase_plane_interactive) PhaseLineD3 (class in tvb.adapters.visualizers.phase_plane_interactive) PhasePlane (class in tvb.adapters.visualizers.phase_plane_interactive) PhasePlaneD3 (class in tvb.adapters.visualizers.phase_plane_interactive) PhasePlaneInteractive (in module tvb.simulator.plot.phase_plane_interactive) pms_cleaner() (in module tvb.adapters.creators.allen_creator) point2json() (tvb.adapters.visualizers.connectivity.Connectivity2DViewer method) pop_message_from_session() (in module tvb.interfaces.web.controllers.common) populate_burst_disk_usage() (tvb.core.services.burst_service.BurstService static method) populate_option_values_for_dtype() (tvb.core.adapters.input_tree.InputTreeManager method) (tvb.core.adapters.input_tree2.InputTreeManager method) populate_surface_fields() (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) Portlet (in module tvb.core.entities.model.model_workflow) portlet_id (tvb.core.portlets.portlet_configurer.PortletConfigurer attribute) PORTLET_IDENT (tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation attribute) portlet_tab_display() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) PortletConfiguration (class in tvb.core.entities.transient.burst_configuration_entities) PortletConfigurer (class in tvb.core.portlets.portlet_configurer) PortletWrapper (class in tvb.core.portlets.xml_reader) PortValidator (class in tvb.interfaces.web.controllers.settings_controller) pos (tvb.basic.traits.util.Args attribute) PositionArray (in module tvb.datatypes.arrays) postprocess_voxel_ts() (in module tvb.basic.arguments_serialisation) PowerSpectraInteractive (in module tvb.simulator.plot.power_spectra_interactive) pre_validators (tvb.interfaces.web.controllers.burst.burst_controller.BurstNameForm attribute) (tvb.interfaces.web.controllers.project.figure_controller.EditPreview attribute) (tvb.interfaces.web.controllers.project.project_controller.EditForm attribute) (tvb.interfaces.web.controllers.settings_controller.SettingsForm attribute) (tvb.interfaces.web.controllers.users_controller.EditUserForm attribute) (tvb.interfaces.web.controllers.users_controller.LoginForm attribute) (tvb.interfaces.web.controllers.users_controller.RecoveryForm attribute) (tvb.interfaces.web.controllers.users_controller.RegisterForm attribute) prefix_adapters_parameters() (tvb.core.portlets.portlet_configurer.PortletConfigurer method) PREFIX_ID_LEAF (tvb.core.entities.transient.structure_entities.StructureNode attribute) PREFIX_ID_NODE (tvb.core.entities.transient.structure_entities.StructureNode attribute) PREFIX_ID_PROJECT (tvb.core.entities.transient.structure_entities.StructureNode attribute) PREFIX_LEFT (tvb.adapters.uploaders.brco.parser.XMLParser attribute)

PREFIX_RIGHT (tvb.adapters.uploaders.brco.parser.XMLParser attribute) PREFIX_TVB_ID (tvb.adapters.uploaders.brco.parser.XMLParser attribute) prepare_adapter() (tvb.core.services.flow_service.FlowService method) prepare_entity_interface() (tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller.SpatioTemporalController static method) prepare_for_json() (tvb.core.entities.transient.graph_structures.FullGraphStructure method) prepare_for_operation_mode() (tvb.basic.config.profile_settings.BaseSettingsProfile method) prepare_full_json() (tvb.core.entities.transient.pse.ContextDiscretePSE method) prepare_group_launch() (tvb.interfaces.web.controllers.flow_controller.FlowController method) prepare_individual_jsons() (tvb.core.entities.transient.pse.ContextDiscretePSE method) prepare_input_params_tree() (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser static method) prepare_mapped_sensors_as_measure_points_params() (in module tvb.adapters.visualizers.sensors) prepare_metrics_datatype() (tvb.core.entities.transient.pse.ContextDiscretePSE method) prepare_next_step() (tvb.core.services.workflow_service.WorkflowService method) prepare_node_data() (tvb.adapters.visualizers.pse_isocline.IsoclinePSEAdapter static method) prepare_operations() (tvb.core.services.operation_service.OperationService method) prepare_operations_for_workflowsteps() (tvb.core.services.operation_service.OperationService method) prepare_param_names() (tvb.core.adapters.input_tree.InputTreeManager static method) (tvb.core.adapters.input_tree2.InputTreeManager static method) prepare_parameters() (tvb.adapters.visualizers.histogram.HistogramViewer method) (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter static method) prepare_range_labels() (tvb.adapters.visualizers.pse_discrete.DiscretePSEAdapter static method) prepare_sensors_as_measure_points_params() (in module tvb.adapters.visualizers.sensors) prepare_shell_surface_urls() (in module tvb.adapters.visualizers.surface_view) prepare_time_slice() (in module tvb.datatypes.time_series) prepare_ui_inputs() (tvb.core.adapters.abcadapter.ABCAdapter method) preprocess_space_parameters() (in module tvb.basic.arguments_serialisation) preprocess_time_parameters() (in module tvb.basic.arguments_serialisation) PreSigmoidal (in module tvb.simulator.coupling) preview_page_size (tvb.adapters.visualizers.eeg_monitor.EegMonitor attribute) PrincipalComponents (in module tvb.datatypes.mode_decompositions) profile() (tvb.interfaces.web.controllers.users_controller.UserController method) profile_func() (in module tvb.interfaces.web.controllers.decorators) ProgressLogger (in module tvb.simulator.monitors) Project (in module tvb.core.entities.model.model_project) PROJECT_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) PROJECT_VERSION (tvb.basic.config.settings.VersionSettings attribute) ProjectController (class in tvb.interfaces.web.controllers.project.project_controller) ProjectImportException Projection (in module tvb.simulator.monitors) ProjectionMatrix (in module tvb.datatypes.projections) ProjectionMatrixSurfaceEEGImporter (class in tvb.adapters.uploaders.projection_matrix_importer) ProjectionSurfaceEEG (in module tvb.datatypes.projections) ProjectionSurfaceMEG (in module tvb.datatypes.projections) ProjectionSurfaceSEEG (in module tvb.datatypes.projections) PROJECTS_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute) PROJECTS_PAGE_SIZE (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) ProjectService (class in tvb.core.services.project_service) ProjectServiceException ProjectUpdateManager (class in tvb.core.project_versions.project_update_manager) projectupload() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) ProxyMetastabilitySynchrony (in module tvb.analyzers.metric_proxy_metastability) PRROJECTS_FOR_LINK_KEY (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) PRROJECTS_LINKED_KEY (tvb.interfaces.web.controllers.project.project_controller.ProjectController attribute) pse_error() (tvb.interfaces.web.controllers.burst.exploration_controller.ParameterExplorationController method) PseIsoModel (class in tvb.adapters.visualizers.pse_isocline) PsiTable (in module tvb.datatypes.lookup_tables) PulseTrain (in module tvb.datatypes.equations) PYTHON_INTERPRETER_PATH (tvb.basic.config.profile_settings.BaseSettingsProfile attribute)

Q

query() (tvb.simulator.history.BaseHistory method) (tvb.simulator.history.DenseHistory method) (tvb.simulator.history.SparseHistory method)

query_sparse() (tvb.simulator.history.SparseHistory method)

R

RandomStream (in module tvb.simulator.noise) Range (class in tvb.basic.traits.itree_model) (in module tvb.basic.traits.types_basic) range_interval (tvb.basic.traits.core.TraitsInfo attribute) Raw (in module tvb.simulator.monitors) raw (tvb.simulator.common.Buffer attribute) read() (tvb.adapters.uploaders.obj.parser.ObjParser method) read_annotation_terms() (tvb.adapters.uploaders.brco.parser.XMLParser method) read_array() (tvb.basic.readers.FileReader method) read_array_from_file() (tvb.basic.readers.ZipReader method) read_binary_datatype_attribute() (tvb.interfaces.web.controllers.flow_controller.FlowController method) read_data() (tvb.adapters.uploaders.signals_importer.VHDR method) read_datatype_attribute() (tvb.interfaces.web.controllers.flow_controller.FlowController method) read_field() (tvb.basic.readers.H5Reader method) read_gain_from_brainstorm() (tvb.basic.readers.FileReader method) read_h5() (in module tvb.interfaces.command.demos.datatypes.read_from_h5) read_list_data() (tvb.adapters.uploaders.abcuploader.ABCUploader static method) read_matlab_data() (tvb.adapters.uploaders.abcuploader.ABCUploader static method) read_metadata() (tvb.core.entities.file.xml_metadata_handlers.XMLReader method) read_nested_mat_file() (in module tvb.adapters.uploaders.mat.parser) read_nested_mat_structure() (in module tvb.adapters.uploaders.mat.parser) read_only (tvb.simulator.descriptors.NDArray attribute) read_only_element() (tvb.core.entities.file.xml_metadata_handlers.XMLReader method) read_optional_array_from_file() (tvb.basic.readers.ZipReader method) read_optional_field() (tvb.basic.readers.H5Reader method) read_project_metadata() (tvb.core.entities.file.files_helper.FilesHelper method) ReaderException readjsonstructure() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) readserverstaticfile() (tvb.interfaces.web.controllers.flow_controller.FlowController method) recoverpassword() (tvb.interfaces.web.controllers.users_controller.UserController method) RecoveryForm (class in tvb.interfaces.web.controllers.users_controller) ReducedSetBase (in module tvb.simulator.models.stefanescu_jirsa) ReducedSetFitzHughNagumo (in module tvb.simulator.models.stefanescu_jirsa) ReducedSetHindmarshRose (in module tvb.simulator.models.stefanescu_jirsa) ReducedWongWang (in module tvb.simulator.models.wong_wang) REGION_CORTICAL (tvb.adapters.uploaders.networkx_connectivity.parser.NetworkxParser attribute) RegionMapping (in module tvb.datatypes.region_mapping) RegionMapping_Importer (class in tvb.adapters.uploaders.region_mapping_importer) RegionMappingRemover (class in tvb.datatype_removers.remover_region_mapping) RegionMappingViewer (class in tvb.adapters.visualizers.surface_view) RegionsModelParametersController (class in tvb.interfaces.web.controllers.burst.region_model_parameters_controller) RegionStimulusContext (class in tvb.core.entities.transient.context_stimulus) RegionStimulusController (class in tvb.interfaces.web.controllers.spatial.region_stimulus_controller) RegionStimulusCreator (class in tvb.adapters.creators.stimulus_creator) RegionVolumeMapping (in module tvb.datatypes.region_mapping) RegionVolumeMappingRemover (class in tvb.datatype_removers.remover_region_mapping) RegionVolumeMappingVisualiser (class in tvb.adapters.visualizers.region_volume_mapping) register() (tvb.interfaces.web.controllers.users_controller.UserController method) REGISTERED_PROFILES (tvb.basic.profile.TvbProfile attribute) RegisterForm (class in tvb.interfaces.web.controllers.users_controller) RELEVANT_VIEW (tvb.core.entities.transient.filtering.StaticFiltersFactory attribute) reload_burst_operation() (tvb.interfaces.web.controllers.flow_controller.FlowController method) reload_default() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) reloadoperation() (tvb.interfaces.web.controllers.flow_controller.FlowController method)

remove_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) remove_datatype() (tvb.core.adapters.abcremover.ABCRemover method) (tvb.core.entities.file.files_helper.FilesHelper method) (tvb.core.entities.storage.root_dao.RootDAO method) (tvb.core.services.project_service.ProjectService method) (tvb.datatype_removers.remover_connectivity.ConnectivityRemover method) (tvb.datatype_removers.remover_region_mapping.RegionMappingRemover method) (tvb.datatype_removers.remover_sensor.SensorRemover method) (tvb.datatype_removers.remover_surface.SurfaceRemover method) (tvb.datatype_removers.remover_timeseries.TimeseriesRemover method) (tvb.datatype_removers.remover_volume.VolumeRemover method) remove_entity() (tvb.core.entities.storage.root_dao.RootDAO method) remove_files() (tvb.core.entities.file.files_helper.FilesHelper static method) remove_focal_point() (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) remove_folder() (tvb.core.entities.file.files_helper.FilesHelper static method) remove_from_session() (in module tvb.interfaces.web.controllers.common) remove_image_metadata() (tvb.core.entities.file.files_helper.FilesHelper method) remove_link() (tvb.core.services.flow_service.FlowService static method) remove_mean() (in module tvb.analyzers.metric_proxy_metastability) remove_metadata() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) remove_operation() (tvb.core.services.project_service.ProjectService method) remove_operation_data() (tvb.core.entities.file.files_helper.FilesHelper method) remove_project() (tvb.core.services.project_service.ProjectService method) remove_project_structure() (tvb.core.entities.file.files_helper.FilesHelper method) remove_result_figure() (tvb.core.services.figure_service.FigureService method) remove_visualizer_references() (in module tvb.core.entities.model.db_update_scripts.010_update_db) RemoveDataTypeException removelink() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) rename_burst() (tvb.core.services.burst_service.BurstService static method) (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) rename_project_structure() (tvb.core.entities.file.files_helper.FilesHelper method) RENDER_HTML (tvb.basic.config.settings.WebSettings attribute) report() (tvb.interfaces.command.benchmark.Bench method) RequestHandler (class in tvb.interfaces.web.request_handler) required (tvb.basic.traits.core.TraitsInfo attribute) reset() (in module tvb.core.services.initializer) (tvb.core.entities.model.model_burst.TabConfiguration method) (tvb.core.entities.transient.context_local_connectivity.ContextLocalConnectivity method) (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method) (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method) reset_burst() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) reset_database() (in module tvb.core.entities.model_manager) reset_equations_for_all_parameters() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) reset_local_connectivity() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) reset_param_equation() (tvb.interfaces.web.entities.context_model_parameters.SurfaceContextModelParameters method) reset_password() (tvb.core.services.user_service.UserService method) reset_region_stimulus() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) RESOLUTION_OPTIONS (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder attribute) restricted_modules (tvb.basic.config.utils.LibraryModulesFinder attribute) ResultFigure (in module tvb.core.entities.model.model_operation) retrieve_all_users() (tvb.core.services.user_service.UserService static method) retrieve_measure_points_prams() (tvb.adapters.visualizers.brain.BrainViewer method) (tvb.adapters.visualizers.brain.DualBrainViewer method) retrieve_project_full() (tvb.core.services.project_service.ProjectService method) retrieve_projects_for_user() (tvb.core.services.project_service.ProjectService method) retrieve_result_figures() (tvb.core.services.figure_service.FigureService method) review_operation_inputs() (tvb.core.adapters.abcadapter.ABCAdapter method) (tvb.core.adapters.input_tree.InputTreeManager method) (tvb.core.adapters.input_tree2.InputTreeManager method) RIGHT_SUFFIX_RE (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) rollback_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method) ROOT_NODE_PATH (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute) RootDAO (class in tvb.core.entities.storage.root_dao) rotate_reference() (in module tvb.adapters.creators.allen_creator) run() (tvb.core.services.backend_client.OperationExecutor method) (tvb.interfaces.command.benchmark.Bench method) run_all_updates() (tvb.core.code_versions.base_classes.UpdateManager method) (tvb.core.code_versions.code_update_manager.CodeUpdateManager method) (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) (tvb.core.project_versions.project_update_manager.ProjectUpdateManager method) run_export() (in module tvb.interfaces.command.demos.project.project_export) run_import() (in module tvb.interfaces.command.demos.project.project_import) run_update_script() (tvb.core.code_versions.base_classes.UpdateManager method) (tvb.core.code_versions.code_update_manager.CodeUpdateManager method) RungeKutta4thOrderDeterministic (in module tvb.simulator.integrators)

S

sampen() (in module tvb.analyzers.info) save_measure_points_selection() (tvb.core.services.flow_service.FlowService static method) save_parameters() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) save_project_to_user() (tvb.core.services.user_service.UserService static method) save_pse_filter() (tvb.core.services.flow_service.FlowService static method) save_settings() (tvb.core.services.settings_service.SettingsService method) save_simulator_configuration() (tvb.interfaces.web.controllers.burst.burst_controller.BurstController method) Scaling (in module tvb.simulator.coupling) SCHEDULE_COMMAND (tvb.basic.config.settings.ClusterSettings attribute) SCHEDULER_OAR (tvb.basic.config.settings.ClusterSettings attribute) SCHEDULER_SLURM (tvb.basic.config.settings.ClusterSettings attribute) scheme() (tvb.simulator.integrators.SciPyODE method) (tvb.simulator.integrators.SciPySDE method) SciPyODE (class in tvb.simulator.integrators) SciPyODEBase (class in tvb.simulator.integrators) SciPySDE (class in tvb.simulator.integrators) search_and_export_ts() (in module tvb.interfaces.command.demos.datatypes.search_and_export) SECTION_ANALYZE (tvb.interfaces.web.structure.WebStructure attribute) SECTION_BURST (tvb.interfaces.web.structure.WebStructure attribute) SECTION_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute) SECTION_PROJECT (tvb.interfaces.web.structure.WebStructure attribute) SECTION_STIMULUS (tvb.interfaces.web.structure.WebStructure attribute) SECTION_USER (tvb.interfaces.web.structure.WebStructure attribute) select_multiple (tvb.basic.traits.core.TraitsInfo attribute) select_simulator_inputs() (tvb.core.adapters.input_tree.InputTreeManager static method) (tvb.core.adapters.input_tree2.InputTreeManager static method) selected (tvb.core.entities.transient.graph_structures.NodeStructure attribute) SelectedAdapterContext (class in tvb.interfaces.web.entities.context_selected_adapter) SelectTypeNode (class in tvb.basic.traits.itree_model) send() (in module tvb.core.services.email_sender) SensorRemover (class in tvb.datatype_removers.remover_sensor) Sensors (in module tvb.datatypes.sensors) Sensors_Importer (class in tvb.adapters.uploaders.sensors_importer) SensorsEEG (in module tvb.datatypes.sensors) SensorsInternal (in module tvb.datatypes.sensors) SensorsMEG (in module tvb.datatypes.sensors) SensorsTSBase (in module tvb.datatypes.time_series) SensorsViewer (class in tvb.adapters.visualizers.sensors) SEP (tvb.core.entities.transient.structure_entities.StructureNode attribute) Sequence (in module tvb.basic.traits.types_basic) sequential_random_deletion() (in module tvb.analyzers.graph) sequential_targeted_deletion() (in module tvb.analyzers.graph) SerializationManager (class in tvb.core.services.burst_config_serialization) ServicesBaseException session (tvb.core.entities.storage.DAO attribute) (tvb.core.entities.storage.datatype_dao.DatatypeDAO attribute) (tvb.core.entities.storage.operation_dao.OperationDAO attribute) (tvb.core.entities.storage.project_dao.CaseDAO attribute) (tvb.core.entities.storage.root_dao.RootDAO attribute) (tvb.core.entities.storage.workflow_dao.WorkflowDAO attribute) SESSION_KEY (tvb.interfaces.web.controllers.burst.dynamic_model_controller.SessionCache attribute) SESSION_META_CLASS (in module tvb.core.entities.storage.session_maker) SessionCache (class in tvb.interfaces.web.controllers.burst.dynamic_model_controller) SessionMaker() (in module tvb.core.entities.storage.session_maker) SessionsStack (class in tvb.core.entities.storage.session_maker) Set (in module tvb.basic.traits.types_basic) set_active_stimulus() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method) (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method) set_algorithm() (tvb.core.entities.transient.burst_export_entities.StepInfo method) set_analyzers() (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration method) set_datatype_visibility() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) (tvb.core.services.project_service.ProjectService static method) set_dynamic_step_references() (tvb.core.services.workflow_service.WorkflowService static method) set_error_message() (in module tvb.interfaces.web.controllers.common) set_focal_points() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method) set_important_message() (in module tvb.interfaces.web.controllers.common) set_info_message() (in module tvb.interfaces.web.controllers.common) set_loggers_level() (tvb.basic.logger.builder.LoggerBuilder method) set_message() (in module tvb.interfaces.web.controllers.common) set_metadata() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) set_operation() (tvb.core.entities.transient.burst_export_entities.WorkflowStepInformation method) set_operation_and_group_visibility() (tvb.core.entities.storage.operation_dao.OperationDAO method) (tvb.core.services.project_service.ProjectService method) set_portlet() (tvb.core.entities.transient.burst_export_entities.WorkflowViewStepInformation method) set_profile() (tvb.basic.profile.TvbProfile class method) set_project_structure_grouping() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) set_view_steps() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method) set_viewer_color_scheme() (tvb.interfaces.web.controllers.users_controller.UserController method) set_visibility() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) set_visualizer() (tvb.core.entities.transient.burst_configuration_entities.PortletConfiguration method) set_warning_message() (in module tvb.interfaces.web.controllers.common) set_weights() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method) set_workflow_steps() (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method) set_workflows() (tvb.core.entities.transient.burst_export_entities.BurstInformation method) setRanges() (tvb.core.entities.transient.pse.ContextDiscretePSE method) settings() (in module tvb.interfaces.web.controllers.decorators) (tvb.interfaces.web.controllers.settings_controller.SettingsController method) SettingsController (class in tvb.interfaces.web.controllers.settings_controller) SettingsForm (class in tvb.interfaces.web.controllers.settings_controller) SettingsManager (class in tvb.basic.config.stored) SettingsService (class in tvb.core.services.settings_service) setup_python_path() (tvb.basic.config.environment.Environment method) setup_tk_tcl_environ() (tvb.basic.config.environment.Environment method) shape (tvb.simulator.descriptors.NDArray attribute) shape_color (tvb.core.entities.transient.graph_structures.NodeData attribute) shape_size (tvb.core.entities.transient.graph_structures.NodeData attribute) shape_type (tvb.core.entities.transient.graph_structures.NodeData attribute) show_confirmation_overlay() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) show_group_of_algorithms() (tvb.interfaces.web.controllers.flow_controller.FlowController method) showBlockerOverlay() (tvb.interfaces.web.controllers.base_controller.BaseController method) showOnlineHelp() (tvb.interfaces.web.controllers.help.help_controller.HelpController method) Sigmoid (in module tvb.datatypes.equations) Sigmoidal (in module tvb.simulator.coupling) SigmoidalJansenRit (in module tvb.simulator.coupling) simple_gen_astr() (in module tvb.simulator.common) SimpleTimedRotatingFileHandler (class in tvb.basic.logger.simple_handler) SimulationState (in module tvb.datatypes.simulation_state) Simulator (in module tvb.simulator.simulator) SimulatorAdapter (class in tvb.adapters.simulator.simulator_adapter) singleton() (in module tvb.core.entities.storage.session_maker) Sinusoid (in module tvb.datatypes.equations) SkinAir (in module tvb.datatypes.surfaces) SkullSkin (in module tvb.datatypes.surfaces) Slice (in module tvb.basic.traits.types_basic) slice_str() (in module tvb.basic.arguments_serialisation) SparseCoupling (in module tvb.simulator.coupling) SparseHistory (class in tvb.simulator.history) SparseMatrix (in module tvb.basic.traits.types_mapped_light) (in module tvb.core.traits.types_mapped) SpatialApplicableEquation (in module tvb.datatypes.equations) SpatialAverage (in module tvb.simulator.monitors) SpatialPattern (in module tvb.datatypes.patterns) SpatialPatternVolume (in module tvb.datatypes.patterns) SpatioTemporalCall (class in tvb.datatypes.patterns) SpatioTemporalController (class in tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller) SpatioTemporalPattern (in module tvb.datatypes.patterns) spectral_dbscan() (in module tvb.analyzers.fcd_matrix) spectral_embedding() (in module tvb.analyzers.fcd_matrix) StandAloneClient (class in tvb.core.services.backend_client) start_transaction() (tvb.core.entities.storage.session_maker.SessionsStack method) start_tvb() (in module tvb.interfaces.web.run) STATES (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) STATIC_ACCEPTED_TYPES (tvb.core.adapters.abcadapter.ABCAdapter attribute) StaticAttr (class in tvb.simulator.descriptors) StaticFiltersFactory (class in tvb.core.entities.transient.filtering) STATUS (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) STATUS_COMMAND (tvb.basic.config.settings.ClusterSettings attribute) step (tvb.simulator.common.Buffer attribute) step_1() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) step_1_submit() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) step_2() (tvb.interfaces.web.controllers.spatial.local_connectivity_controller.LocalConnectivityController method) (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) step_2_submit() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method)

step_analyzers() (tvb.interfaces.web.controllers.flow_controller.FlowController method) step_connectivity() (tvb.interfaces.web.controllers.flow_controller.FlowController method) STEP_INDEX_KEY (tvb.core.entities.transient.burst_configuration_entities.WorkflowStepConfiguration attribute) StepInfo (class in tvb.core.entities.transient.burst_export_entities) StimuliRegion (in module tvb.datatypes.patterns) StimuliSurface (in module tvb.datatypes.patterns) STIMULUS_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) stop() (tvb.core.services.backend_client.OperationExecutor method) stop_burst() (tvb.core.services.burst_service.BurstService method) stop_burst_operation() (tvb.interfaces.web.controllers.flow_controller.FlowController method) STOP_COMMAND (tvb.basic.config.settings.ClusterSettings attribute) stop_operation() (tvb.core.services.backend_client.ClusterSchedulerClient static method) (tvb.core.services.backend_client.StandAloneClient static method) (tvb.core.services.operation_service.OperationService method) (tvb.interfaces.web.controllers.flow_controller.FlowController method) stop_pid() (tvb.core.services.backend_client.OperationExecutor static method) stopped() (tvb.core.services.backend_client.OperationExecutor method) StorageException store_data() (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager method) store_datatype() (tvb.core.services.import_service.ImportService method) store_entities() (tvb.core.entities.storage.root_dao.RootDAO method) store_entity() (tvb.core.entities.storage.root_dao.RootDAO method) store_exploration_section() (tvb.interfaces.web.controllers.flow_controller.FlowController method) store_list_data() (in module tvb.core.utils) store_measure_points_selection() (tvb.interfaces.web.controllers.flow_controller.FlowController method) store_project() (tvb.core.services.project_service.ProjectService method) store_pse_filter() (tvb.interfaces.web.controllers.flow_controller.FlowController method) store_result_figure() (tvb.core.services.figure_service.FigureService method) store_workflow_step() (tvb.core.services.workflow_service.WorkflowService static method) stored_adapter (tvb.core.adapters.abcadapter.ABCAdapter attribute) stored_metadata (tvb.basic.traits.core.TraitsInfo attribute) StoredPSEFilter (in module tvb.core.entities.model.model_datatype) storeresultfigure() (tvb.interfaces.web.controllers.project.figure_controller.FigureController method) str_class_name() (in module tvb.basic.traits.util) Strength (class in tvb.adapters.analyzers.bct_degree_adapters) StrengthISOS (class in tvb.adapters.analyzers.bct_degree_adapters) StrengthWeights (class in tvb.adapters.analyzers.bct_degree_adapters) String (in module tvb.basic.traits.types_basic) string2array() (in module tvb.core.utils) string2bool() (in module tvb.core.utils) string2date() (in module tvb.core.utils) StringArray (in module tvb.datatypes.arrays) Struct (class in tvb.simulator.common) StructuralMRI (in module tvb.datatypes.structural) StructureException StructureNode (class in tvb.core.entities.transient.structure_entities) SUB_SECTION_ACCOUNT (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ALLEN (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_1 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_10 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_11 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_12 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_13 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_14 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_15 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_16 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_17 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_18 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_2 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_3 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_4 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_5 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_6 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_7 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_8 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_9 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_ANALYZE_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_BURST (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_CONNECTIVITY_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_DATA_STRUCTURE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_FIGURES (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_LIST_PROJECTS (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_LOCAL_CONNECTIVITY (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_LOGIN (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_MODEL_REGIONS (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_MODEL_SURFACE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_NOISE_CONFIGURATION (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_OPERATIONS (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_PHASE_PLANE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_PROJECT_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_PROPERTIES_PROJECT (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_STIMULUS_MENU (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_STIMULUS_REGION (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_STIMULUS_SURFACE (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_0 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_1 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_10 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_11 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_12 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_13 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_14 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_15 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_16 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_17 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_18 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_19 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_2 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_20 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_21 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_22 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_23 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_24 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_25 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_3 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_4 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_5 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_6 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_7 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_8 (tvb.interfaces.web.structure.WebStructure attribute) SUB_SECTION_VIEW_9 (tvb.interfaces.web.structure.WebStructure attribute) subclasses() (tvb.basic.traits.util.TypeRegister method) SubgraphCentrality (class in tvb.adapters.analyzers.bct_centrality_adapters) subject (tvb.core.entities.transient.structure_entities.DataTypeMetaData attribute) SUBJECT_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) submit() (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) (tvb.interfaces.web.controllers.burst.noise_configuration_controller.NoiseConfigurationController method) submit_model_parameters() (tvb.interfaces.web.controllers.burst.region_model_parameters_controller.RegionsModelParametersController method) (tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller.SurfaceModelParametersController method) SubSample (in module tvb.simulator.monitors) summary() (tvb.datatypes.surfaces.ValidationResult method) supHopf (in module tvb.simulator.models.oscillator) Surface (in module tvb.datatypes.surfaces) SurfaceContextModelParameters (class in tvb.interfaces.web.entities.context_model_parameters) SurfaceModelParametersController (class in tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller) SurfaceRemover (class in tvb.datatype_removers.remover_surface) SurfaceStimulusContext (class in tvb.core.entities.transient.context_stimulus) SurfaceStimulusController (class in tvb.interfaces.web.controllers.spatial.surface_stimulus_controller) SurfaceStimulusCreator (class in tvb.adapters.creators.stimulus_creator) SurfaceVerticesNrValidator (class in tvb.interfaces.web.controllers.settings_controller) SurfaceViewer (class in tvb.adapters.visualizers.surface_view) SVN_VERSION (tvb.basic.config.settings.VersionSettings attribute) (tvb.config.profile_settings.TestSQLiteProfile attribute) switch_online_help() (tvb.interfaces.web.controllers.users_controller.UserController method) synchronized() (in module tvb.core.decorators) SYSTEM_USER_NAME (tvb.basic.config.settings.WebAdminSettings attribute)

T

TabConfiguration (class in tvb.core.entities.model.model_burst) TEMP_FOLDER (tvb.core.entities.file.files_helper.FilesHelper attribute) TemporalApplicableEquation (in module tvb.datatypes.equations) TemporalAverage (in module tvb.simulator.monitors) TEST_LIBRARY_PROFILE (tvb.basic.profile.TvbProfile attribute) TEST_POSTGRES_PROFILE (tvb.basic.profile.TvbProfile attribute) TEST_SQLITE_PROFILE (tvb.basic.profile.TvbProfile attribute) TestLibraryProfile (class in tvb.basic.config.profile_settings) TestPostgresProfile (class in tvb.config.profile_settings) TestSQLiteProfile (class in tvb.config.profile_settings) ThreadNrValidator (class in tvb.interfaces.web.controllers.settings_controller) TIME_STEP_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) time_stride (tvb.simulator.history.SparseHistory attribute) TimeSeries (class in tvb.adapters.visualizers.time_series) (in module tvb.datatypes.time_series) TimeSeriesEEG (in module tvb.datatypes.time_series) TimeSeriesInteractive (in module tvb.simulator.plot.timeseries_interactive) TimeSeriesMEG (in module tvb.datatypes.time_series) TimeseriesMetricsAdapter (class in tvb.adapters.analyzers.metrics_group_timeseries) TimeSeriesRegion (in module tvb.datatypes.time_series) TimeseriesRemover (class in tvb.datatype_removers.remover_timeseries) TimeSeriesSEEG (in module tvb.datatypes.time_series) TimeSeriesSurface (in module tvb.datatypes.time_series) TimeSeriesVolume (in module tvb.datatypes.time_series) TimeSeriesVolumeVisualiser (class in tvb.adapters.visualizers.time_series_volume) to_dict() (tvb.basic.filters.chain.UIFilter method) (tvb.core.entities.exportable.Exportable method) (tvb.core.entities.transient.burst_export_entities.BurstInformation method) (tvb.core.entities.transient.burst_export_entities.StepInfo method) (tvb.core.entities.transient.burst_export_entities.WorkflowInformation method) (tvb.core.portlets.xml_reader.PortletWrapper method) to_json() (tvb.basic.filters.chain.FilterChain method) (tvb.core.entities.transient.graph_structures.NodeData method) (tvb.core.entities.transient.graph_structures.NodeStructure method) (tvb.datatypes.annotations.AnnotationTerm method) to_tuple() (tvb.datatypes.annotations.AnnotationTerm method) TopographicViewer (class in tvb.adapters.visualizers.topographic) TopographyCalculations (class in tvb.adapters.visualizers.topographic) total_ms() (in module tvb.simulator.common) TrackvizTractsImporter (class in tvb.adapters.uploaders.tract_importer) TRACT_FILE (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute) TRACT_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) Tracts (in module tvb.datatypes.tracts) TractViewer (class in tvb.adapters.visualizers.tract) TRADE_CRASH_SAFETY_FOR_SPEED (tvb.config.profile_settings.TestSQLiteProfile attribute) TraitedInterfaceGenerator (class in tvb.basic.traits.traited_interface) TraitedInterfaceGeneratorExperimental (class in tvb.basic.traits.traited_interface2) TraitsInfo (class in tvb.basic.traits.core) trajectories() (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) (tvb.interfaces.web.controllers.burst.dynamic_model_controller.DynamicModelController method) transactional() (in module tvb.core.entities.storage.session_maker) TransitivityBinaryDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) TransitivityBinaryUnDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) TransitivityWeightedDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) TransitivityWeightedUnDirected (class in tvb.adapters.analyzers.bct_clustering_adapters) TRIANGLES_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute) try_get_absolute_path() (in module tvb.basic.readers) try_get_operation_by_id() (tvb.core.entities.storage.operation_dao.OperationDAO method) try_load_last_entity_of_type() (tvb.core.entities.storage.datatype_dao.DatatypeDAO method) try_parse() (in module tvb.basic.traits.parameters_factory) ts_builder (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter attribute) TS_EEG (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter attribute) TS_REGION (tvb.adapters.uploaders.mat_timeseries_importer.MatTimeSeriesImporter attribute) Tuple (in module tvb.basic.traits.types_basic) tvb() (tvb.interfaces.web.controllers.base_controller.BaseController method) tvb.__init__ (module) tvb.adapters.analyzers (module) tvb.adapters.analyzers.bct_adapters (module) tvb.adapters.analyzers.bct_centrality_adapters (module) tvb.adapters.analyzers.bct_clustering_adapters (module) tvb.adapters.analyzers.bct_degree_adapters (module) tvb.adapters.analyzers.cross_correlation_adapter (module) tvb.adapters.analyzers.fcd_adapter (module) tvb.adapters.analyzers.fmri_balloon_adapter (module) tvb.adapters.analyzers.fourier_adapter (module) tvb.adapters.analyzers.ica_adapter (module) tvb.adapters.analyzers.matlab_worker (module) tvb.adapters.analyzers.metrics_group_timeseries (module) tvb.adapters.analyzers.node_coherence_adapter (module) tvb.adapters.analyzers.node_complex_coherence_adapter (module) tvb.adapters.analyzers.node_covariance_adapter (module) tvb.adapters.analyzers.pca_adapter (module) tvb.adapters.analyzers.wavelet_adapter (module) tvb.adapters.creators (module) tvb.adapters.creators.allen_creator (module) tvb.adapters.creators.connectivity_creator (module) tvb.adapters.creators.local_connectivity_creator (module) tvb.adapters.creators.stimulus_creator (module) tvb.adapters.exporters.abcexporter (module) tvb.adapters.exporters.exceptions (module) tvb.adapters.exporters.export_manager (module) tvb.adapters.exporters.obj_export (module) tvb.adapters.exporters.tvb_export (module) tvb.adapters.simulator (module) tvb.adapters.simulator.simulator_adapter (module) tvb.adapters.uploaders (module) tvb.adapters.uploaders.abcuploader (module) tvb.adapters.uploaders.brco.parser (module) tvb.adapters.uploaders.brco_importer (module) tvb.adapters.uploaders.cff_importer (module) tvb.adapters.uploaders.connectivity_measure_importer (module) tvb.adapters.uploaders.csv_connectivity_importer (module) tvb.adapters.uploaders.fieldtrip_importer (module) tvb.adapters.uploaders.gifti.parser (module) tvb.adapters.uploaders.gifti_surface_importer (module) tvb.adapters.uploaders.gifti_timeseries_importer (module) tvb.adapters.uploaders.mat.parser (module) tvb.adapters.uploaders.mat_timeseries_importer (module) tvb.adapters.uploaders.networkx_connectivity.parser (module) tvb.adapters.uploaders.networkx_importer (module) tvb.adapters.uploaders.nifti.parser (module) tvb.adapters.uploaders.nifti_importer (module) tvb.adapters.uploaders.obj.parser (module) tvb.adapters.uploaders.obj.surface (module) tvb.adapters.uploaders.obj_importer (module) tvb.adapters.uploaders.projection_matrix_importer (module) tvb.adapters.uploaders.region_mapping_importer (module) tvb.adapters.uploaders.sensors_importer (module) tvb.adapters.uploaders.signals_importer (module) tvb.adapters.uploaders.tract_importer (module) tvb.adapters.uploaders.tvb_importer (module) tvb.adapters.uploaders.zip_connectivity_importer (module) tvb.adapters.uploaders.zip_surface.parser (module) tvb.adapters.uploaders.zip_surface_importer (module) tvb.adapters.visualizers (module) tvb.adapters.visualizers.annotations_viewer (module) tvb.adapters.visualizers.brain (module) tvb.adapters.visualizers.complex_imaginary_coherence (module) tvb.adapters.visualizers.connectivity (module) tvb.adapters.visualizers.connectivity_edge_bundle (module) tvb.adapters.visualizers.covariance (module) tvb.adapters.visualizers.cross_coherence (module) tvb.adapters.visualizers.cross_correlation (module) tvb.adapters.visualizers.eeg_monitor (module) tvb.adapters.visualizers.fourier_spectrum (module) tvb.adapters.visualizers.histogram (module) tvb.adapters.visualizers.ica (module) tvb.adapters.visualizers.local_connectivity_view (module) tvb.adapters.visualizers.matrix_viewer (module) tvb.adapters.visualizers.pca (module) tvb.adapters.visualizers.pearson_cross_correlation (module) tvb.adapters.visualizers.pearson_edge_bundle (module) tvb.adapters.visualizers.phase_plane_interactive (module) tvb.adapters.visualizers.pse_discrete (module) tvb.adapters.visualizers.pse_isocline (module) tvb.adapters.visualizers.region_volume_mapping (module) tvb.adapters.visualizers.sensors (module) tvb.adapters.visualizers.surface_view (module) tvb.adapters.visualizers.time_series (module) tvb.adapters.visualizers.time_series_volume (module) tvb.adapters.visualizers.topographic (module) tvb.adapters.visualizers.tract (module) tvb.adapters.visualizers.wavelet_spectrogram (module) tvb.analyzers.correlation_coefficient (module) tvb.analyzers.cross_correlation (module) tvb.analyzers.fcd_matrix (module) tvb.analyzers.fft (module) tvb.analyzers.fmri_balloon (module) tvb.analyzers.graph (module) tvb.analyzers.ica (module) tvb.analyzers.info (module) tvb.analyzers.metric_kuramoto_index (module) tvb.analyzers.metric_proxy_metastability (module) tvb.analyzers.metric_variance_global (module) tvb.analyzers.metric_variance_of_node_variance (module) tvb.analyzers.metrics_base (module) tvb.analyzers.node_coherence (module) tvb.analyzers.node_complex_coherence (module) tvb.analyzers.node_covariance (module) tvb.analyzers.pca (module) tvb.analyzers.wavelet (module) tvb.basic (module) tvb.basic.arguments_serialisation (module) tvb.basic.config.environment (module) tvb.basic.config.profile_settings (module) tvb.basic.config.settings (module) tvb.basic.config.stored (module) tvb.basic.config.utils (module) tvb.basic.filters.chain (module) tvb.basic.filters.exceptions (module) tvb.basic.logger.builder (module) tvb.basic.logger.simple_handler (module) tvb.basic.profile (module) tvb.basic.readers (module) tvb.basic.traits (module) tvb.basic.traits.core (module) tvb.basic.traits.exceptions (module) tvb.basic.traits.itree_model (module) tvb.basic.traits.parameters_factory (module) tvb.basic.traits.traited_interface (module) tvb.basic.traits.traited_interface2 (module) tvb.basic.traits.types_basic (module) tvb.basic.traits.types_mapped (module) tvb.basic.traits.types_mapped_light (module) tvb.basic.traits.util (module) tvb.config (module) tvb.config.logger.cluster_handler (module) tvb.config.profile_settings (module) tvb.core (module) tvb.core.adapters.abcadapter (module) tvb.core.adapters.abcdisplayer (module) tvb.core.adapters.abcremover (module) tvb.core.adapters.constants (module) tvb.core.adapters.exceptions (module) tvb.core.adapters.input_tree (module) tvb.core.adapters.input_tree2 (module) tvb.core.adapters.introspector (module) tvb.core.code_versions (module) tvb.core.code_versions.base_classes (module) tvb.core.code_versions.code_update_manager (module) tvb.core.code_versions.code_update_scripts (module) tvb.core.code_versions.code_update_scripts.4455_update_code (module) tvb.core.code_versions.code_update_scripts.4750_update_code (module) tvb.core.code_versions.code_update_scripts.5454_update_code (module) tvb.core.code_versions.code_update_scripts.6093_update_code (module) tvb.core.code_versions.code_update_scripts.6600_update_code (module) tvb.core.code_versions.code_update_scripts.6728_update_code (module) tvb.core.code_versions.code_update_scripts.7350_update_code (module) tvb.core.code_versions.code_update_scripts.7450_update_code (module)

tvb.core.decorators (module) tvb.core.entities.exportable (module) tvb.core.entities.file.exceptions (module) tvb.core.entities.file.file_update_scripts (module) tvb.core.entities.file.file_update_scripts.002_update_files (module) tvb.core.entities.file.file_update_scripts.003_update_files (module) tvb.core.entities.file.file_update_scripts.004_update_files (module) tvb.core.entities.file.files_helper (module) tvb.core.entities.file.files_update_manager (module) tvb.core.entities.file.hdf5_storage_manager (module) tvb.core.entities.file.xml_metadata_handlers (module) tvb.core.entities.load (module) tvb.core.entities.model (module) tvb.core.entities.model.db_update_scripts (module) tvb.core.entities.model.db_update_scripts.001_update_db (module) tvb.core.entities.model.db_update_scripts.002_update_db (module) tvb.core.entities.model.db_update_scripts.003_update_db (module) tvb.core.entities.model.db_update_scripts.004_update_db (module) tvb.core.entities.model.db_update_scripts.005_update_db (module) tvb.core.entities.model.db_update_scripts.006_update_db (module) tvb.core.entities.model.db_update_scripts.007_update_db (module) tvb.core.entities.model.db_update_scripts.008_update_db (module) tvb.core.entities.model.db_update_scripts.009_update_db (module) tvb.core.entities.model.db_update_scripts.010_update_db (module) tvb.core.entities.model.db_update_scripts.011_update_db (module) tvb.core.entities.model.db_update_scripts.012_update_db (module) tvb.core.entities.model.db_update_scripts.013_update_db (module) tvb.core.entities.model.db_update_scripts.014_update_db (module) tvb.core.entities.model.db_update_scripts.015_update_db (module) tvb.core.entities.model.db_update_scripts.016_update_db (module) tvb.core.entities.model.db_update_scripts.017_update_db (module) tvb.core.entities.model.db_update_scripts.helper (module) tvb.core.entities.model.model_base (module) tvb.core.entities.model.model_burst (module) tvb.core.entities.model.model_datatype (module) tvb.core.entities.model.model_operation (module) tvb.core.entities.model.model_project (module) tvb.core.entities.model.model_workflow (module) tvb.core.entities.model_manager (module) tvb.core.entities.storage (module) tvb.core.entities.storage.datatype_dao (module) tvb.core.entities.storage.exceptions (module) tvb.core.entities.storage.operation_dao (module) tvb.core.entities.storage.project_dao (module) tvb.core.entities.storage.root_dao (module) tvb.core.entities.storage.session_maker (module) tvb.core.entities.storage.workflow_dao (module) tvb.core.entities.transient (module) tvb.core.entities.transient.burst_configuration_entities (module) tvb.core.entities.transient.burst_export_entities (module) tvb.core.entities.transient.context_local_connectivity (module) tvb.core.entities.transient.context_overlay (module) tvb.core.entities.transient.context_stimulus (module) tvb.core.entities.transient.filtering (module) tvb.core.entities.transient.graph_structures (module) tvb.core.entities.transient.pse (module) tvb.core.entities.transient.structure_entities (module) tvb.core.model_validations (module) tvb.core.operation_async_launcher (module) tvb.core.portlets.portlet_configurer (module) tvb.core.portlets.xml_reader (module) tvb.core.project_versions (module) tvb.core.project_versions.project_update_manager (module) tvb.core.project_versions.project_update_scripts (module) tvb.core.project_versions.project_update_scripts.1_update_project (module) tvb.core.project_versions.project_update_scripts.2_update_project (module) tvb.core.removers_factory (module) tvb.core.services (module) tvb.core.services.backend_client (module) tvb.core.services.burst_config_serialization (module) tvb.core.services.burst_service (module) tvb.core.services.email_sender (module) tvb.core.services.exceptions (module) tvb.core.services.figure_service (module) tvb.core.services.flow_service (module) tvb.core.services.import_service (module) tvb.core.services.initializer (module) tvb.core.services.operation_service (module) tvb.core.services.project_service (module) tvb.core.services.settings_service (module) tvb.core.services.texture_to_json (module) tvb.core.services.user_service (module) tvb.core.services.workflow_service (module) tvb.core.traits.core (module) tvb.core.traits.db_events (module) tvb.core.traits.sql_mapping (module) tvb.core.traits.types_mapped (module) tvb.core.utils (module) tvb.datatype_removers (module) tvb.datatype_removers.remover_connectivity (module) tvb.datatype_removers.remover_region_mapping (module) tvb.datatype_removers.remover_sensor (module) tvb.datatype_removers.remover_surface (module) tvb.datatype_removers.remover_timeseries (module) tvb.datatype_removers.remover_volume (module) tvb.datatypes (module) tvb.datatypes.annotations (module) tvb.datatypes.arrays (module) tvb.datatypes.connectivity (module) tvb.datatypes.cortex (module) tvb.datatypes.equations (module) tvb.datatypes.fcd (module) tvb.datatypes.graph (module) tvb.datatypes.local_connectivity (module) tvb.datatypes.lookup_tables (module) tvb.datatypes.mapped_values (module) tvb.datatypes.mode_decompositions (module) tvb.datatypes.noise_framework (module) tvb.datatypes.patterns (module) tvb.datatypes.projections (module) tvb.datatypes.region_mapping (module) tvb.datatypes.sensors (module) tvb.datatypes.sensors_bst_to_tvb (module) tvb.datatypes.simulation_state (module) tvb.datatypes.spectral (module) tvb.datatypes.structural (module) tvb.datatypes.surfaces (module) tvb.datatypes.temporal_correlations (module) tvb.datatypes.time_series (module) tvb.datatypes.tracts (module) tvb.datatypes.volumes (module) tvb.interfaces (module) tvb.interfaces.command.benchmark (module) tvb.interfaces.command.demos.datatypes.modify_h5_metadata (module) tvb.interfaces.command.demos.datatypes.read_from_h5 (module) tvb.interfaces.command.demos.datatypes.search_and_export (module) tvb.interfaces.command.demos.importers.h5_import (module) tvb.interfaces.command.demos.importers.new_importer (module) tvb.interfaces.command.demos.importers.new_importer_launcher (module) tvb.interfaces.command.demos.operations.run_analyzer (module) tvb.interfaces.command.demos.operations.run_simulation (module) tvb.interfaces.command.demos.operations.run_workflow (module) tvb.interfaces.command.demos.project.project_export (module) tvb.interfaces.command.demos.project.project_import (module) tvb.interfaces.command.lab (module) tvb.interfaces.web.controllers.base_controller (module) tvb.interfaces.web.controllers.burst.base_controller (module) tvb.interfaces.web.controllers.burst.burst_controller (module) tvb.interfaces.web.controllers.burst.dynamic_model_controller (module) tvb.interfaces.web.controllers.burst.exploration_controller (module) tvb.interfaces.web.controllers.burst.noise_configuration_controller (module) tvb.interfaces.web.controllers.burst.region_model_parameters_controller (module) tvb.interfaces.web.controllers.common (module) tvb.interfaces.web.controllers.decorators (module) tvb.interfaces.web.controllers.flow_controller (module) tvb.interfaces.web.controllers.help.help_config (module) tvb.interfaces.web.controllers.help.help_controller (module) tvb.interfaces.web.controllers.project.figure_controller (module) tvb.interfaces.web.controllers.project.project_controller (module) tvb.interfaces.web.controllers.settings_controller (module) tvb.interfaces.web.controllers.spatial.base_spatio_temporal_controller (module) tvb.interfaces.web.controllers.spatial.local_connectivity_controller (module) tvb.interfaces.web.controllers.spatial.region_stimulus_controller (module) tvb.interfaces.web.controllers.spatial.surface_model_parameters_controller (module) tvb.interfaces.web.controllers.spatial.surface_stimulus_controller (module) tvb.interfaces.web.controllers.users_controller (module) tvb.interfaces.web.entities.context_model_parameters (module) tvb.interfaces.web.entities.context_overlay (module) tvb.interfaces.web.entities.context_selected_adapter (module) tvb.interfaces.web.request_handler (module) tvb.interfaces.web.run (module) tvb.interfaces.web.structure (module) tvb.simulator.common (module) tvb.simulator.coupling (module) tvb.simulator.descriptors (module) tvb.simulator.history (module) tvb.simulator.integrators (module) tvb.simulator.models (module) tvb.simulator.models.base (module) tvb.simulator.models.epileptor (module) tvb.simulator.models.hopfield (module) tvb.simulator.models.jansen_rit (module) tvb.simulator.models.larter_breakspear (module) tvb.simulator.models.linear (module) tvb.simulator.models.oscillator (module) tvb.simulator.models.stefanescu_jirsa (module) tvb.simulator.models.wilson_cowan (module) tvb.simulator.models.wong_wang (module) tvb.simulator.monitors (module) tvb.simulator.noise (module) tvb.simulator.plot.phase_plane_interactive (module) tvb.simulator.plot.power_spectra_interactive (module) tvb.simulator.plot.timeseries_interactive (module) tvb.simulator.simulator (module) TVB_ATTRIBUTE_PREFIX (tvb.core.entities.file.hdf5_storage_manager.HDF5StorageManager attribute) TVB_CONFIG_FILE (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) (tvb.config.profile_settings.TestSQLiteProfile attribute) TVB_FILE_EXTENSION (tvb.core.entities.file.files_helper.FilesHelper attribute) TVB_OPERARATION_FILE (tvb.core.entities.file.files_helper.FilesHelper attribute) TVB_PROJECT_FILE (tvb.core.entities.file.files_helper.FilesHelper attribute) TVB_STORAGE (tvb.basic.config.profile_settings.LibrarySettingsProfile attribute) TVB_STORAGE_FILE_EXTENSION (tvb.core.entities.file.files_helper.FilesHelper attribute) TVB_USER_HOME (tvb.basic.config.profile_settings.BaseSettingsProfile attribute) TVBException TVBExporter (class in tvb.adapters.exporters.tvb_export) TVBImporter (class in tvb.adapters.uploaders.tvb_importer) TVBJSONEncoder (class in tvb.core.utils) TvbProfile (class in tvb.basic.profile) TvbZip (class in tvb.core.entities.file.files_helper) Type (in module tvb.basic.traits.core) type (tvb.core.entities.transient.structure_entities.StructureNode attribute) TYPE_FILE (tvb.core.entities.transient.structure_entities.StructureNode attribute) TYPE_FOLDER (tvb.core.entities.transient.structure_entities.StructureNode attribute) TYPE_INVALID (tvb.core.entities.transient.structure_entities.StructureNode attribute) TYPE_MULTIPLE (tvb.core.adapters.abcadapter.ABCAdapter attribute) TYPE_SELECT (tvb.core.adapters.abcadapter.ABCAdapter attribute) TypeBase (in module tvb.basic.traits.core) TypeNode (class in tvb.basic.traits.itree_model) TypeRegister (class in tvb.basic.traits.util)

U

ui_name (tvb.core.entities.transient.burst_configuration_entities.AdapterConfiguration attribute) (tvb.core.portlets.portlet_configurer.PortletConfigurer attribute) UIFilter (class in tvb.basic.filters.chain) UNIQUE_ID_ATTR (tvb.adapters.uploaders.gifti.parser.GIFTIParser attribute) UniqueUsername (class in tvb.interfaces.web.controllers.users_controller) unpack_zip() (tvb.core.entities.file.files_helper.FilesHelper method) unravel_history() (in module tvb.simulator.common) update() (in module tvb.core.code_versions.code_update_scripts.4455_update_code) (in module tvb.core.code_versions.code_update_scripts.4750_update_code) (in module tvb.core.code_versions.code_update_scripts.5454_update_code) (in module tvb.core.code_versions.code_update_scripts.6093_update_code) (in module tvb.core.code_versions.code_update_scripts.6600_update_code) (in module tvb.core.code_versions.code_update_scripts.6728_update_code) (in module tvb.core.code_versions.code_update_scripts.7350_update_code) (in module tvb.core.code_versions.code_update_scripts.7450_update_code) (in module tvb.core.entities.file.file_update_scripts.002_update_files) (in module tvb.core.entities.file.file_update_scripts.003_update_files) (in module tvb.core.entities.file.file_update_scripts.004_update_files) (in module tvb.core.project_versions.project_update_scripts.1_update_project) (in module tvb.core.project_versions.project_update_scripts.2_update_project) (tvb.simulator.history.BaseHistory method) (tvb.simulator.history.DenseHistory method) update_axis() (tvb.adapters.visualizers.phase_plane_interactive.PhaseLineD3 method) (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) update_default_values() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method) update_derived_parameters() (tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo method) (tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose method) update_dictionary() (in module tvb.core.removers_factory) update_dt() (in module tvb.interfaces.command.demos.datatypes.modify_h5_metadata) update_eq_kwargs() (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method) update_executed_workflow_state() (tvb.core.services.workflow_service.WorkflowService method) update_from_interface() (tvb.core.entities.transient.context_stimulus.RegionStimulusContext method) (tvb.core.entities.transient.context_stimulus.SurfaceStimulusContext method) update_history_status() (tvb.core.services.burst_service.BurstService method) update_integrator_clamping() (tvb.adapters.visualizers.phase_plane_interactive.PhasePlaneD3 method) update_localconnectivity_metadata() (in module tvb.interfaces.command.demos.datatypes.modify_h5_metadata) update_metadata() (tvb.core.services.project_service.ProjectService method) update_operation_metadata() (tvb.core.entities.file.files_helper.FilesHelper method) update_operations_count() (tvb.interfaces.web.controllers.base_controller.BaseController method)

update_portlet_configuration() (tvb.core.portlets.portlet_configurer.PortletConfigurer static method) (tvb.core.services.burst_service.BurstService method) update_scaling() (tvb.interfaces.web.controllers.spatial.region_stimulus_controller.RegionStimulusController method) UPDATE_SCRIPTS_SUFFIX (tvb.core.entities.file.files_update_manager.FilesUpdateManager attribute) UpdateManager (class in tvb.core.code_versions.base_classes) updatemetadata() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) upgrade() (in module tvb.core.entities.model.db_update_scripts.001_update_db) (in module tvb.core.entities.model.db_update_scripts.002_update_db) (in module tvb.core.entities.model.db_update_scripts.003_update_db) (in module tvb.core.entities.model.db_update_scripts.004_update_db) (in module tvb.core.entities.model.db_update_scripts.005_update_db) (in module tvb.core.entities.model.db_update_scripts.006_update_db) (in module tvb.core.entities.model.db_update_scripts.007_update_db) (in module tvb.core.entities.model.db_update_scripts.008_update_db) (in module tvb.core.entities.model.db_update_scripts.009_update_db) (in module tvb.core.entities.model.db_update_scripts.010_update_db) (in module tvb.core.entities.model.db_update_scripts.011_update_db) (in module tvb.core.entities.model.db_update_scripts.012_update_db) (in module tvb.core.entities.model.db_update_scripts.013_update_db) (in module tvb.core.entities.model.db_update_scripts.014_update_db) (in module tvb.core.entities.model.db_update_scripts.015_update_db) (in module tvb.core.entities.model.db_update_scripts.016_update_db) (in module tvb.core.entities.model.db_update_scripts.017_update_db) upgrade_file() (tvb.core.entities.file.files_update_manager.FilesUpdateManager method) url2path() (in module tvb.core.utils) use_storage (tvb.basic.traits.core.TraitsInfo attribute) User (in module tvb.core.entities.model.model_project) user_environment_execution() (in module tvb.core.decorators) USER_HELP_PAGE (tvb.interfaces.web.controllers.help.help_config.HelpConfig attribute) USER_ROLES (tvb.core.services.user_service.UserService attribute) User_to_Project (in module tvb.core.entities.model.model_project) UserController (class in tvb.interfaces.web.controllers.users_controller) usermanagement() (tvb.interfaces.web.controllers.users_controller.UserController method) UsernameException UserPreferences (in module tvb.core.entities.model.model_project) UserService (class in tvb.core.services.user_service) using_template() (in module tvb.interfaces.web.controllers.decorators)

V

validate() (tvb.interfaces.web.controllers.users_controller.UserController method) validate_matlab_path() (tvb.interfaces.web.controllers.settings_controller.SettingsController method) validate_results() (tvb.core.model_validations.ModelValidator method) validate_user() (tvb.core.services.user_service.UserService method) ValidationException ValidationRange (in module tvb.basic.traits.types_basic) ValidationResult (class in tvb.datatypes.surfaces) value (tvb.simulator.descriptors.Final.State attribute) ValueWrapper (in module tvb.datatypes.mapped_values) VarianceNodeVariance (in module tvb.analyzers.metric_variance_of_node_variance) VersionSettings (class in tvb.basic.config.settings) VERTICES_TOKEN (tvb.adapters.uploaders.zip_surface.parser.ZipSurfaceParser attribute)

VHDR (class in tvb.adapters.uploaders.signals_importer) view_stimulus() (tvb.interfaces.web.controllers.spatial.surface_stimulus_controller.SurfaceStimulusController method) viewall() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) viewoperations() (tvb.interfaces.web.controllers.project.project_controller.ProjectController method) VISUALIZERS_ONLINE_HELP_SHORTCUTS (tvb.interfaces.web.structure.WebStructure attribute) VISUALIZERS_ROOT (tvb.basic.config.settings.WebSettings attribute) (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) VISUALIZERS_URL_PREFIX (tvb.basic.config.settings.WebSettings attribute) (tvb.core.adapters.abcdisplayer.ABCDisplayer attribute) VODE (in module tvb.simulator.integrators) VODEStochastic (in module tvb.simulator.integrators) Volume (in module tvb.datatypes.volumes) VolumeRemover (class in tvb.datatype_removers.remover_volume) VolumetricDataMixin (class in tvb.datatypes.structural)

W

WaveletCoefficients (in module tvb.datatypes.spectral) WaveletSpectrogramVisualizer (class in tvb.adapters.visualizers.wavelet_spectrogram) WEB_LOG_FILE (tvb.config.logger.cluster_handler.ClusterTimedRotatingFileHandler attribute) WEB_PROFILE (tvb.basic.profile.TvbProfile attribute) WEB_SECTION_TITLES (tvb.interfaces.web.structure.WebStructure attribute) WEB_SUBSECTION_TITLES (tvb.interfaces.web.structure.WebStructure attribute) WebAdminSettings (class in tvb.basic.config.settings) WebSettings (class in tvb.basic.config.settings) WebSettingsProfile (class in tvb.config.profile_settings) WebStructure (class in tvb.interfaces.web.structure) WEIGHT_TOKEN (tvb.adapters.uploaders.zip_connectivity_importer.ZIPConnectivityImporter attribute) weights (tvb.simulator.history.BaseHistory attribute) WEIGHTS_FILE (tvb.adapters.uploaders.csv_connectivity_importer.CSVConnectivityImporter attribute) WEIGHTS_OPTIONS (tvb.adapters.creators.allen_creator.AllenConnectomeBuilder attribute) white() (tvb.simulator.noise.Noise method) WhiteMatterSurface (in module tvb.datatypes.surfaces) WilsonCowan (in module tvb.simulator.models.wilson_cowan) Workflow (in module tvb.core.entities.model.model_workflow) WorkflowDAO (class in tvb.core.entities.storage.workflow_dao) WorkflowException

WorkflowInformation (class in tvb.core.entities.transient.burst_export_entities) WorkflowInterStepsException WorkflowService (class in tvb.core.services.workflow_service) WorkflowStep (in module tvb.core.entities.model.model_workflow) WorkflowStepConfiguration (class in tvb.core.entities.transient.burst_configuration_entities) WorkflowStepInformation (class in tvb.core.entities.transient.burst_export_entities) WorkflowStepView (in module tvb.core.entities.model.model_workflow) WorkflowViewStepInformation (class in tvb.core.entities.transient.burst_export_entities) Workspace (class in tvb.simulator.descriptors) write() (tvb.adapters.uploaders.obj.parser.ObjWriter method) (tvb.core.entities.file.xml_metadata_handlers.XMLWriter method) write_config_data() (tvb.basic.config.stored.SettingsManager method) write_data_slice() (tvb.datatypes.structural.VolumetricDataMixin method) write_folder() (tvb.core.entities.file.files_helper.TvbZip method) write_image_metadata() (tvb.core.entities.file.files_helper.FilesHelper method) write_model_parameters() (tvb.core.services.burst_config_serialization.SerializationManager method) write_noise_parameters() (tvb.core.services.burst_config_serialization.SerializationManager method) write_operation_metadata() (tvb.core.entities.file.files_helper.FilesHelper method) write_project_metadata() (tvb.core.entities.file.files_helper.FilesHelper method) write_project_metadata_from_dict() (tvb.core.entities.file.files_helper.FilesHelper method)

X

XMLParser (class in tvb.adapters.uploaders.brco.parser) XmlParserException XMLPortletReader (class in tvb.core.portlets.xml_reader)

XMLReader (class in tvb.core.entities.file.xml_metadata_handlers) XMLWriter (class in tvb.core.entities.file.xml_metadata_handlers)

Z

ZetterbergJansen (in module tvb.simulator.models.jansen_rit) zip_directory() (in module tvb.simulator.common) ZIP_FILE_EXTENSION (tvb.adapters.exporters.export_manager.ExportManager attribute) zip_files() (tvb.core.entities.file.files_helper.FilesHelper static method) zip_folder() (tvb.core.entities.file.files_helper.FilesHelper static method) zip_folders() (tvb.core.entities.file.files_helper.FilesHelper static method)

ZIPConnectivityImporter (class in tvb.adapters.uploaders.zip_connectivity_importer) ZipReader (class in tvb.basic.readers) ZIPSurfaceImporter (class in tvb.adapters.uploaders.zip_surface_importer) ZipSurfaceParser (class in tvb.adapters.uploaders.zip_surface.parser) ZipTxtTractsImporter (class in tvb.adapters.uploaders.tract_importer)